PMC:7321036 / 20113-20957
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T153 | 54-62 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
| T154 | 89-96 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T155 | 97-104 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T156 | 117-120 | Body_part | denotes | map | http://purl.org/sig/ont/fma/fma67847 |
| T157 | 159-167 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T158 | 222-230 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T159 | 256-264 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T160 | 425-433 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T161 | 479-487 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T162 | 538-546 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T104 | 19-27 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T105 | 67-75 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T106 | 706-715 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T76801 | 30-35 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T10288 | 36-41 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T39350 | 78-83 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T96781 | 153-167 | http://purl.obolibrary.org/obo/PR_000029067 | denotes | human proteins |
| T23709 | 185-187 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T92566 | 473-487 | http://purl.obolibrary.org/obo/PR_000029067 | denotes | human proteins |
| T70112 | 532-546 | http://purl.obolibrary.org/obo/PR_000029067 | denotes | human proteins |
| T31688 | 681-685 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 4, 8 |
| T99883 | 720-721 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T133 | 89-96 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T134 | 97-104 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T135 | 159-167 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T136 | 222-230 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T137 | 256-264 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T138 | 425-433 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T139 | 479-487 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T140 | 538-546 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T109 | 0-15 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | Phosphorylation |
| T110 | 767-782 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 312 | 19-29 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 313 | 36-41 | Species | denotes | Human | Tax:9606 |
| 319 | 67-77 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 320 | 153-158 | Species | denotes | human | Tax:9606 |
| 321 | 473-478 | Species | denotes | human | Tax:9606 |
| 322 | 532-537 | Species | denotes | human | Tax:9606 |
| 323 | 706-715 | Disease | denotes | infection | MESH:D007239 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T135 | 63-231 | Sentence | denotes | The SARS-CoV-2 virus-host protein-protein interaction map (Gordon et al., 2020) found 332 human proteins interacting with 27 (26 wild-type and 1 mutant) viral proteins. |
| T136 | 232-418 | Sentence | denotes | Here we found 40 of 332 proteins significantly differentially phosphorylated across at least two time points (adjusted p < 0.05 and absolute value of log2 fold change [abs(log2FC)] > 1). |
| T137 | 419-460 | Sentence | denotes | Viral proteins are shown as red diamonds. |
| T138 | 461-514 | Sentence | denotes | Interacting human proteins are shown as gray circles. |
| T139 | 515-740 | Sentence | denotes | PHs emanate from human proteins, colored by their log2 fold change compared with uninfected control samples (red, increase; blue, decrease) at each time point (0, 2, 4, 8, 12, and 24 h after infection) in a clockwise fashion. |
| T140 | 741-844 | Sentence | denotes | An interactive version of phosphorylation data can be found at https://kroganlab.ucsf.edu/network-maps. |