PMC:7321036 / 17105-17902
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T118 | 52-59 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T119 | 60-67 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T120 | 154-161 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T121 | 162-169 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T122 | 591-598 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1896 | 320-322 | http://purl.obolibrary.org/obo/CLO_0001236 | denotes | 2A |
| T44759 | 330-332 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T25565 | 330-332 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T74619 | 607-609 | http://purl.obolibrary.org/obo/CLO_0001236 | denotes | 2A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T98 | 52-59 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T99 | 60-67 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T100 | 126-133 | Chemical | denotes | solvent | http://purl.obolibrary.org/obo/CHEBI_46787 |
| T101 | 154-161 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T102 | 162-169 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T103 | 330-332 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T104 | 591-598 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T92 | 12-27 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T93 | 346-361 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T94 | 513-528 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T95 | 732-747 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 279 | 370-374 | Gene | denotes | Nsp9 | Gene:43740578 |
| 280 | 657-661 | Gene | denotes | ACE2 | Gene:59272 |
| 281 | 635-636 | Gene | denotes | S | Gene:43740568 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T115 | 0-334 | Sentence | denotes | To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2). |
| T116 | 335-494 | Sentence | denotes | The single phosphorylation site in Nsp9 was predicted to be at an interface region (“True”), which was supported by inspection of the homodimer structure (PDB: |
| T117 | 495-501 | Sentence | denotes | 6W4B). |
| T118 | 502-611 | Sentence | denotes | Additional phosphorylation sites were predicted to be at interface residues within the S protein (Figure 2A). |
| T119 | 612-797 | Sentence | denotes | However, inspection of S in complex with the ACE2 receptor (Shang et al., 2020; Lan et al., 2020) reveals some of these phosphorylation sites to be near but not at the interface region. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32645325-17152079-20773053 | 307-311 | 17152079 | denotes | 2007 |
| 32645325-32225175-20773054 | 686-690 | 32225175 | denotes | 2020 |
| 32645325-32225176-20773055 | 704-708 | 32225176 | denotes | 2020 |