PMC:7321036 / 124706-125038 JSONTXT

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T382","span":{"begin":9,"end":10},"obj":"GO:0006260"},{"id":"T383","span":{"begin":10,"end":11},"obj":"NCBITaxon:10239"},{"id":"T384","span":{"begin":11,"end":12},"obj":"SO:0001026"},{"id":"T390","span":{"begin":27,"end":32},"obj":"GO:0039703"},{"id":"T396","span":{"begin":41,"end":42},"obj":"GO:0030532"},{"id":"T397","span":{"begin":42,"end":44},"obj":"GO:0005840"},{"id":"T402","span":{"begin":45,"end":49},"obj":"PR:000000045"},{"id":"T406","span":{"begin":54,"end":59},"obj":"GO:0065007"},{"id":"T408","span":{"begin":65,"end":67},"obj":"GO:0065007"},{"id":"T419","span":{"begin":97,"end":98},"obj":"GO:0006915"},{"id":"T420","span":{"begin":103,"end":105},"obj":"GO:0006260"},{"id":"T421","span":{"begin":105,"end":111},"obj":"SO:0001811"},{"id":"T426","span":{"begin":130,"end":132},"obj":"GO:0008150"},{"id":"T428","span":{"begin":136,"end":138},"obj":"SP_7"},{"id":"T430","span":{"begin":158,"end":164},"obj":"SP_7"},{"id":"T431","span":{"begin":165,"end":166},"obj":"NCBITaxon:10239"},{"id":"T453","span":{"begin":218,"end":219},"obj":"GO:0000165"},{"id":"T466","span":{"begin":246,"end":247},"obj":"GO:0051235"},{"id":"T495","span":{"begin":274,"end":275},"obj":"PR:000008800"},{"id":"T498","span":{"begin":278,"end":279},"obj":"CHEBI:23888;CHEBI:23888"},{"id":"T510","span":{"begin":293,"end":294},"obj":"GO:0006338"},{"id":"T511","span":{"begin":294,"end":295},"obj":"GO:0032991"},{"id":"T514","span":{"begin":299,"end":301},"obj":"GO:0065007"},{"id":"T516","span":{"begin":313,"end":314},"obj":"SO:0005836;GO:0065007"},{"id":"T517","span":{"begin":316,"end":318},"obj":"SO:0005836"},{"id":"T518","span":{"begin":325,"end":326},"obj":"PR:000008800"},{"id":"T521","span":{"begin":327,"end":328},"obj":"GO:0005680"},{"id":"T523","span":{"begin":328,"end":329},"obj":"GO:0065007"},{"id":"T524","span":{"begin":329,"end":330},"obj":"GO:0005856"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T58","span":{"begin":134,"end":137},"obj":"Body_part"},{"id":"T59","span":{"begin":180,"end":184},"obj":"Body_part"},{"id":"T60","span":{"begin":185,"end":189},"obj":"Body_part"},{"id":"T61","span":{"begin":278,"end":282},"obj":"Body_part"},{"id":"T62","span":{"begin":308,"end":312},"obj":"Body_part"}],"attributes":[{"id":"A58","pred":"fma_id","subj":"T58","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A59","pred":"fma_id","subj":"T59","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T34","span":{"begin":180,"end":184},"obj":"Body_part"}],"attributes":[{"id":"A34","pred":"uberon_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T408","span":{"begin":154,"end":162},"obj":"Disease"}],"attributes":[{"id":"A408","pred":"mondo_id","subj":"T408","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T176","span":{"begin":40,"end":50},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T177","span":{"begin":118,"end":128},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T178","span":{"begin":174,"end":179},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T179","span":{"begin":180,"end":184},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T180","span":{"begin":180,"end":184},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T181","span":{"begin":185,"end":195},"obj":"http://purl.obolibrary.org/obo/CLO_0000031"},{"id":"T182","span":{"begin":278,"end":282},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T183","span":{"begin":308,"end":318},"obj":"http://purl.obolibrary.org/obo/CLO_0000031"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T58","span":{"begin":19,"end":50},"obj":"http://purl.obolibrary.org/obo/GO_0003700"},{"id":"T59","span":{"begin":19,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0000981"},{"id":"T60","span":{"begin":19,"end":32},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T61","span":{"begin":97,"end":128},"obj":"http://purl.obolibrary.org/obo/GO_0003700"},{"id":"T62","span":{"begin":97,"end":117},"obj":"http://purl.obolibrary.org/obo/GO_0000981"},{"id":"T63","span":{"begin":97,"end":110},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}

{"project":"LitCovid-sentences","denotations":[{"id":"T994","span":{"begin":0,"end":71},"obj":"Sentence"},{"id":"T995","span":{"begin":72,"end":227},"obj":"Sentence"},{"id":"T996","span":{"begin":228,"end":270},"obj":"Sentence"},{"id":"T997","span":{"begin":271,"end":277},"obj":"Sentence"},{"id":"T998","span":{"begin":278,"end":332},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table S6 Predicted Transcription Factor Activities, Related to Figure 6\nFull results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al. 2020) using DoRothEA (Garcia-Alonso et al. 2019). Gene symbols, NES scores, and cell lines are depicted."}