PMC:7321036 / 124706-125038 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T382 9-10 GO:0006260 denotes P
T383 10-11 NCBITaxon:10239 denotes r
T384 11-12 SO:0001026 denotes e
T390 27-32 GO:0039703 denotes ption
T396 41-42 GO:0030532 denotes c
T397 42-44 GO:0005840 denotes ti
T402 45-49 PR:000000045 denotes itie
T406 54-59 GO:0065007 denotes lated
T408 65-67 GO:0065007 denotes gu
T419 97-98 GO:0006915 denotes t
T420 103-105 GO:0006260 denotes ri
T421 105-111 SO:0001811 denotes ption
T426 130-132 GO:0008150 denotes ro
T428 136-138 SP_7 denotes A-
T430 158-164 SP_7 denotes -CoV-2
T431 165-166 NCBITaxon:10239 denotes i
T453 218-219 GO:0000165 denotes l
T466 246-247 GO:0051235 denotes E
T495 274-275 PR:000008800 denotes 9
T498 278-279 CHEBI:23888;CHEBI:23888 denotes G
T510 293-294 GO:0006338 denotes E
T511 294-295 GO:0032991 denotes S
T514 299-301 GO:0065007 denotes re
T516 313-314 SO:0005836;GO:0065007 denotes l
T517 316-318 SO:0005836 denotes es
T518 325-326 PR:000008800 denotes p
T521 327-328 GO:0005680 denotes c
T523 328-329 GO:0065007 denotes t
T524 329-330 GO:0005856 denotes e

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T58 134-137 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T59 180-184 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T60 185-189 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T61 278-282 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T62 308-312 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T34 180-184 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T408 154-162 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T176 40-50 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activities
T177 118-128 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T178 174-179 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T179 180-184 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T180 180-184 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T181 185-195 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines
T182 278-282 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T183 308-318 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T58 19-50 http://purl.obolibrary.org/obo/GO_0003700 denotes Transcription Factor Activities
T59 19-39 http://purl.obolibrary.org/obo/GO_0000981 denotes Transcription Factor
T60 19-32 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T61 97-128 http://purl.obolibrary.org/obo/GO_0003700 denotes transcription factor activities
T62 97-117 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factor
T63 97-110 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T994 0-71 Sentence denotes Table S6 Predicted Transcription Factor Activities, Related to Figure 6
T995 72-227 Sentence denotes Full results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al.
T996 228-270 Sentence denotes 2020) using DoRothEA (Garcia-Alonso et al.
T997 271-277 Sentence denotes 2019).
T998 278-332 Sentence denotes Gene symbols, NES scores, and cell lines are depicted.