PMC:7321036 / 113086-113324
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T46 | 143-147 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T47 | 195-200 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T394 | 175-183 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T108 | 11-19 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T109 | 143-147 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T110 | 195-200 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T25789 | 8-10 | Chemical | denotes | TF | http://purl.obolibrary.org/obo/CHEBI_74862 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 8-10 | http://purl.obolibrary.org/obo/GO_0000981 | denotes | TF |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2364 | 41-46 | Species | denotes | VIPER | Tax:31156 |
| 2367 | 175-194 | Disease | denotes | SARS-CoV-2 infected | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T960 | 0-238 | Sentence | denotes | For the TF activity enrichment analysis, VIPER was executed with the Wald statistic resulting from the differential expression analysis at the gene level between controls and SARS-CoV-2 infected cells using the DESeq2 package (Love et al. |