PMC:7321036 / 112432-112682 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T43","span":{"begin":139,"end":142},"obj":"Body_part"},{"id":"T44","span":{"begin":175,"end":179},"obj":"Body_part"},{"id":"T45","span":{"begin":180,"end":184},"obj":"Body_part"}],"attributes":[{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T32","span":{"begin":175,"end":179},"obj":"Body_part"}],"attributes":[{"id":"A32","pred":"uberon_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T392","span":{"begin":26,"end":34},"obj":"Disease"},{"id":"T393","span":{"begin":37,"end":46},"obj":"Disease"}],"attributes":[{"id":"A392","pred":"mondo_id","subj":"T392","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A393","pred":"mondo_id","subj":"T393","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T97","span":{"begin":169,"end":174},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T98","span":{"begin":175,"end":179},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T99","span":{"begin":175,"end":179},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T100","span":{"begin":180,"end":190},"obj":"http://purl.obolibrary.org/obo/CLO_0000031"},{"id":"T101","span":{"begin":196,"end":197},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T50023","span":{"begin":76,"end":78},"obj":"Chemical"}],"attributes":[{"id":"A37435","pred":"chebi_id","subj":"T50023","obj":"http://purl.obolibrary.org/obo/CHEBI_74862"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T34","span":{"begin":54,"end":74},"obj":"http://purl.obolibrary.org/obo/GO_0000981"},{"id":"T35","span":{"begin":54,"end":67},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T36","span":{"begin":76,"end":78},"obj":"http://purl.obolibrary.org/obo/GO_0000981"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"2362","span":{"begin":169,"end":174},"obj":"Species"},{"id":"2366","span":{"begin":26,"end":46},"obj":"Disease"}],"attributes":[{"id":"A2362","pred":"tao:has_database_id","subj":"2362","obj":"Tax:9606"},{"id":"A2366","pred":"tao:has_database_id","subj":"2366","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T956","span":{"begin":0,"end":250},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}

{"project":"2_test","denotations":[{"id":"32645325-31340985-20773123","span":{"begin":130,"end":134},"obj":"31340985"},{"id":"32645325-32416070-20773124","span":{"begin":244,"end":248},"obj":"32416070"}],"text":"To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020)."}