PMC:7321036 / 112432-112682 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T43 139-142 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T44 175-179 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T45 180-184 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T32 175-179 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T392 26-34 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T393 37-46 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T97 169-174 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T98 175-179 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T99 175-179 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T100 180-190 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines
T101 196-197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T50023 76-78 Chemical denotes TF http://purl.obolibrary.org/obo/CHEBI_74862

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T34 54-74 http://purl.obolibrary.org/obo/GO_0000981 denotes Transcription Factor
T35 54-67 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T36 76-78 http://purl.obolibrary.org/obo/GO_0000981 denotes TF

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2362 169-174 Species denotes human Tax:9606
2366 26-46 Disease denotes SARS-CoV-2 infection MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T956 0-250 Sentence denotes To evaluate the effect of SARS-CoV-2 infection at the Transcription Factor (TF) level, we applied DoRothEA (Garcia-Alonso et al., 2019) to RNA-seq datasets of different human lung cell lines from a recent study (GSE147507) (Blanco-Melo et al., 2020).

2_test

Id Subject Object Predicate Lexical cue
32645325-31340985-20773123 130-134 31340985 denotes 2019
32645325-32416070-20773124 244-248 32416070 denotes 2020