PMC:7321036 / 105687-105894 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":18,"end":25},"obj":"Body_part"},{"id":"T23","span":{"begin":47,"end":54},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T39","span":{"begin":45,"end":46},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T40","span":{"begin":160,"end":167},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"text":"Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T99637","span":{"begin":18,"end":25},"obj":"Chemical"},{"id":"T47385","span":{"begin":47,"end":54},"obj":"Chemical"},{"id":"T11669","span":{"begin":160,"end":167},"obj":"Chemical"},{"id":"T20385","span":{"begin":168,"end":171},"obj":"Chemical"}],"attributes":[{"id":"A95269","pred":"chebi_id","subj":"T99637","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A41508","pred":"chebi_id","subj":"T47385","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A62466","pred":"chebi_id","subj":"T11669","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A53923","pred":"chebi_id","subj":"T20385","obj":"http://purl.obolibrary.org/obo/CHEBI_24870"}],"text":"Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates."}

{"project":"LitCovid-PubTator","denotations":[{"id":"2325","span":{"begin":76,"end":84},"obj":"Disease"}],"attributes":[{"id":"A2325","pred":"tao:has_database_id","subj":"2325","obj":"MESH:D007239"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates."}

{"project":"LitCovid-sentences","denotations":[{"id":"T909","span":{"begin":0,"end":207},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates."}