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PMC:7309518 / 9864-11656 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T44 348-361 Body_part denotes cranial nerve http://purl.org/sig/ont/fma/fma5865
T45 749-754 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T46 819-845 Body_part denotes olfactory epithelial cells http://purl.org/sig/ont/fma/fma67870
T47 840-845 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T48 962-969 Body_part denotes neurons http://purl.org/sig/ont/fma/fma54527
T49 1071-1076 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T50 1081-1097 Body_part denotes olfactory nerves http://purl.org/sig/ont/fma/fma75450
T51 1177-1193 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T52 1188-1193 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T53 1201-1218 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T54 1232-1250 Body_part denotes olfactory receptor http://purl.org/sig/ont/fma/fma67860
T55 1251-1258 Body_part denotes neurons http://purl.org/sig/ont/fma/fma54527
T56 1266-1281 Body_part denotes neuroepithelium http://purl.org/sig/ont/fma/fma64807
T57 1304-1318 Body_part denotes olfactory bulb http://purl.org/sig/ont/fma/fma77624
T58 1323-1332 Body_part denotes brainstem http://purl.org/sig/ont/fma/fma79876
T59 1369-1372 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T60 1419-1433 Body_part denotes cranial nerves http://purl.org/sig/ont/fma/fma63820
T61 1483-1501 Body_part denotes neuronal receptors http://purl.org/sig/ont/fma/fma84653
T62 1509-1521 Body_part denotes nasal cavity http://purl.org/sig/ont/fma/fma54378
T63 1575-1592 Body_part denotes peripheral nerves http://purl.org/sig/ont/fma/fma65239
T64 1667-1684 Body_part denotes facial and nerves http://purl.org/sig/ont/fma/fma50868

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T23 348-361 Body_part denotes cranial nerve http://purl.obolibrary.org/obo/UBERON_0001785
T24 356-361 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T25 749-754 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T26 1071-1076 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T27 1081-1097 Body_part denotes olfactory nerves http://purl.obolibrary.org/obo/UBERON_0001579
T28 1201-1218 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T29 1304-1318 Body_part denotes olfactory bulb http://purl.obolibrary.org/obo/UBERON_0002264
T30 1323-1332 Body_part denotes brainstem http://purl.obolibrary.org/obo/UBERON_0002298
T31 1419-1433 Body_part denotes cranial nerves http://purl.obolibrary.org/obo/UBERON_0001785
T32 1509-1521 Body_part denotes nasal cavity http://purl.obolibrary.org/obo/UBERON_0001707

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T156 80-83 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T157 116-124 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T158 200-203 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T159 226-236 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T160 322-329 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T161 348-369 Disease denotes cranial nerve palsies http://purl.obolibrary.org/obo/MONDO_0002782
T162 397-404 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T163 441-444 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T164 498-518 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569
T165 609-618 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T166 635-643 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T167 687-695 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T168 791-798 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T169 889-896 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T170 911-919 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T171 971-979 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T172 1025-1033 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T173 1125-1134 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T174 1140-1148 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T175 1608-1611 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T58 356-361 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T59 749-754 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T60 749-754 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T61 829-839 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T62 840-845 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T63 1071-1076 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T64 1071-1076 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T65 1091-1097 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T66 1154-1159 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T67 1177-1187 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T68 1188-1193 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T69 1342-1349 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T70 1369-1372 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T71 1369-1372 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T72 1427-1433 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T73 1515-1521 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T74 1586-1592 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T75 1678-1684 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
362 6-13 Species denotes patient Tax:9606
363 295-303 Species denotes patients Tax:9606
378 116-124 Disease denotes COVID-19 MESH:C000657245
379 209-236 Disease denotes critical illness neuropathy MESH:D016638
382 322-337 Disease denotes anosmia/ageusia MESH:D000370
383 348-369 Disease denotes cranial nerve palsies MESH:D003389
403 971-979 Species denotes SARS-CoV Tax:694009
404 984-992 Species denotes MERS-CoV Tax:1335626
405 1000-1013 Species denotes coronaviruses Tax:11118
406 1104-1108 Species denotes mice Tax:10090
407 1140-1148 Species denotes SARS-CoV Tax:694009
409 397-416 Disease denotes anosmia and ageusia MESH:D000370
410 498-518 Disease denotes cranial neuropathies MESH:D003389
411 609-618 Disease denotes infection MESH:D007239
412 635-643 Disease denotes COVID-19 MESH:C000657245
413 687-695 Disease denotes COVID-19 MESH:C000657245
414 791-798 Disease denotes anosmia MESH:D000857
415 858-866 Disease denotes infected MESH:D007239
416 889-896 Disease denotes anosmia MESH:D000857
417 897-904 Disease denotes ageusia MESH:D000370
418 911-919 Disease denotes COVID-19 MESH:C000657245
419 1025-1033 Disease denotes COVID-19 MESH:C000657245
420 1125-1134 Disease denotes infection MESH:D007239

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 590-595 http://purl.obolibrary.org/obo/GO_0050909 denotes taste
T3 1377-1404 http://purl.obolibrary.org/obo/GO_0008090 denotes retrograde axonal transport
T4 1388-1404 http://purl.obolibrary.org/obo/GO_0098930 denotes axonal transport
T5 1388-1404 http://purl.obolibrary.org/obo/GO_0008088 denotes axonal transport
T6 1395-1404 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T48 306-369 Sentence denotes Significance of anosmia/ageusia and other cranial nerve palsies
T49 370-755 Sentence denotes The early manifestation of anosmia and ageusia not only in the present GBS series that often occurred in conjunction with other cranial neuropathies but also in large worldwide cohorts reporting sudden loss of smell and taste early in the infection in up to 60% of COVID-19 carriers5,6,12 is highly informative about COVID-19 neurovirulence or even possible viral entry into the brain.
T50 756-970 Sentence denotes In contrast to commonly reversible anosmia when the non-neural olfactory epithelial cells are virally infected, the often persistent anosmia/ageusia after COVID-19 suggests neurotropism targeting olfactory neurons.
T51 971-1759 Sentence denotes SARS-CoV and MERS-CoV, the 2 coronaviruses similar to COVID-19, are neurovirulent and can enter the brain via olfactory nerves.13 In mice, after oronasal infection with SARS-CoV, the virus not only infects epithelial cells of the respiratory tract but also the olfactory receptor neurons in the neuroepithelium gaining access to the olfactory bulb and brainstem.13 These viruses can also enter the CNS via retrograde axonal transport through other cranial nerves, such as trigeminal, which possesses nociceptive neuronal receptors in the nasal cavity, the sensory fibers of the glossopharyngeal, and via peripheral nerves.13 The present GBS series, where oculomotor, trigeminal, and MRI-enhanced facial and nerves roots were concurrently affected, strengthens (but not prove) this notion.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T91 226-236 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T92 322-329 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T93 330-337 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T94 348-369 Phenotype denotes cranial nerve palsies http://purl.obolibrary.org/obo/HP_0006824
T95 397-404 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T96 409-416 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T97 572-585 Phenotype denotes loss of smell http://purl.obolibrary.org/obo/HP_0000458
T98 791-798 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T99 889-896 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T100 897-904 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051

2_test

Id Subject Object Predicate Lexical cue
32518172-32246917-75850504 46-47 32246917 denotes 7
32518172-32109013-75850505 652-653 32109013 denotes 5