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PMC:7309518 / 772-2213 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 369-380 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T5 462-469 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T6 507-520 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T7 525-529 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T8 638-650 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T9 655-671 Body_part denotes peripheral nerve http://purl.org/sig/ont/fma/fma65239
T10 672-683 Body_part denotes glycolipids http://purl.org/sig/ont/fma/fma82780
T11 825-831 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T12 951-960 Body_part denotes brainstem http://purl.org/sig/ont/fma/fma79876
T13 1287-1291 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 666-671 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T3 951-960 Body_part denotes brainstem http://purl.obolibrary.org/obo/UBERON_0002298

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 107-110 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T19 112-129 Disease denotes encephalomyelitis http://purl.obolibrary.org/obo/MONDO_0005156
T20 133-141 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T22 215-223 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 225-232 Disease denotes Anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T24 249-269 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569
T25 274-289 Disease denotes lymphocytopenia http://purl.obolibrary.org/obo/MONDO_0003783
T26 345-367 Disease denotes Miller-Fisher Syndrome http://purl.obolibrary.org/obo/MONDO_0005851
T27 447-455 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 584-594 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T29 621-629 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 756-764 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 876-884 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 895-898 Disease denotes NAM http://purl.obolibrary.org/obo/MONDO_0009722|http://purl.obolibrary.org/obo/MONDO_0016098
T34 961-973 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T35 975-995 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 525-529 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T4 655-671 http://purl.obolibrary.org/obo/UBERON_0001021 denotes peripheral nerve
T5 825-831 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T6 825-831 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T7 825-831 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T8 825-831 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T9 1285-1291 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 369-380 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T4 400-404 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T5 462-469 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 484-495 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T7 491-495 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T8 507-520 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T9 545-549 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T10 638-650 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T11 672-683 Chemical denotes glycolipids http://purl.obolibrary.org/obo/CHEBI_33563
T12 708-716 Chemical denotes Creatine http://purl.obolibrary.org/obo/CHEBI_16919
T13 1231-1239 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T14 1241-1254 Chemical denotes mycophenolate http://purl.obolibrary.org/obo/CHEBI_62932
T15 1256-1268 Chemical denotes azathioprine http://purl.obolibrary.org/obo/CHEBI_2948

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
49 708-723 Gene denotes Creatine Kinase Gene:51727
50 51-58 Species denotes patient Tax:9606
51 298-303 Species denotes flags Tax:34205
52 774-782 Species denotes patients Tax:9606
53 793-801 Species denotes patients Tax:9606
54 369-380 Chemical denotes ganglioside MESH:D005732
55 484-495 Chemical denotes sialic acid MESH:D019158
56 638-650 Chemical denotes gangliosides MESH:D005732
57 672-683 Chemical denotes glycolipids MESH:D006017
58 1231-1239 Chemical denotes steroids MESH:D013256
59 1241-1254 Chemical denotes mycophenolate MESH:D009173
60 1256-1268 Chemical denotes azathioprine MESH:D001379
61 78-101 Disease denotes acute paralytic disease MESH:D000208
62 112-129 Disease denotes encephalomyelitis MESH:D004679
63 133-141 Disease denotes myositis MESH:D009220
64 215-223 Disease denotes COVID-19 MESH:C000657245
65 234-241 Disease denotes ageusia MESH:D000370
66 249-269 Disease denotes cranial neuropathies MESH:D003389
67 274-289 Disease denotes lymphocytopenia MESH:D008231
68 345-367 Disease denotes Miller-Fisher Syndrome MESH:D019846
69 447-455 Disease denotes COVID-19 MESH:C000657245
70 577-594 Disease denotes ataxic neuropathy MESH:D001039
71 621-629 Disease denotes COVID-19 MESH:C000657245
72 756-773 Disease denotes COVID-19–infected MESH:C000657245
73 817-840 Disease denotes painful muscle weakness MESH:D018908
74 876-884 Disease denotes COVID-19 MESH:C000657245
75 961-973 Disease denotes encephalitis MESH:D004660
76 975-995 Disease denotes cranial neuropathies MESH:D003389
77 1069-1090 Disease denotes demyelinating lesions MESH:D003711

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1341-1356 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-224 Sentence denotes Collective data indicate that in this pandemic any patient presenting with an acute paralytic disease-like GBS, encephalomyelitis or myositis-even without systemic symptoms, may represent the first manifestation of COVID-19.
T12 225-341 Sentence denotes Anosmia, ageusia, other cranial neuropathies and lymphocytopenia are red flags enhancing early diagnostic suspicion.
T13 342-698 Sentence denotes In Miller-Fisher Syndrome, ganglioside antibodies against GD1b, instead of QG1b, were found; because the COVID-19 spike protein also binds to sialic acid-containing glycoproteins for cell-entry and anti-GD1b antibodies typically cause ataxic neuropathy, cross-reactivity between COVID-19–bearing gangliosides and peripheral nerve glycolipids was addressed.
T14 699-923 Sentence denotes Elevated Creatine Kinase (>10,000) is reported in 10% of COVID-19–infected patients; two such patients presented with painful muscle weakness responding to IVIg indicating that COVID-19–triggered NAM is an overlooked entity.
T15 924-1164 Sentence denotes Cases of acute necrotizing brainstem encephalitis, cranial neuropathies with leptomeningeal enhancement, and tumefactive postgadolinium-enhanced demyelinating lesions are now emerging with the need to explore neuroinvasion and autoimmunity.
T16 1165-1441 Sentence denotes Concerns for modifications-if any-of chronic immunotherapies with steroids, mycophenolate, azathioprine, IVIg, and anti-B-cell agents were addressed; the role of complement in innate immunity to viral responses and anti-complement therapeutics (i.e. eculizumab) were reviewed.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 400-404 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059
T2 540-549 GlycoEpitope denotes anti-GD1b http://www.glycoepitope.jp/epitopes/AN0403
T3 545-549 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 133-141 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614
T8 225-232 Phenotype denotes Anosmia http://purl.obolibrary.org/obo/HP_0000458
T9 234-241 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T10 274-289 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T11 584-594 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T12 699-723 Phenotype denotes Elevated Creatine Kinase http://purl.obolibrary.org/obo/HP_0003236
T13 825-840 Phenotype denotes muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T14 961-973 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T15 1001-1027 Phenotype denotes leptomeningeal enhancement http://purl.obolibrary.org/obo/HP_0032070
T16 1069-1082 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T17 1151-1163 Phenotype denotes autoimmunity http://purl.obolibrary.org/obo/HP_0002960