PMC:7307149 / 9275-9711
Annnotations
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T55","span":{"begin":25,"end":33},"obj":"Body_part"},{"id":"T56","span":{"begin":35,"end":42},"obj":"Body_part"},{"id":"T57","span":{"begin":364,"end":371},"obj":"Body_part"}],"attributes":[{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A56","pred":"fma_id","subj":"T56","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A57","pred":"fma_id","subj":"T57","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T55","span":{"begin":190,"end":198},"obj":"Disease"},{"id":"T56","span":{"begin":202,"end":210},"obj":"Disease"}],"attributes":[{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A56","pred":"mondo_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T95","span":{"begin":7,"end":12},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T96","span":{"begin":95,"end":103},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T97","span":{"begin":165,"end":170},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T98","span":{"begin":252,"end":257},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T40","span":{"begin":25,"end":33},"obj":"Chemical"},{"id":"T41","span":{"begin":35,"end":42},"obj":"Chemical"},{"id":"T42","span":{"begin":364,"end":371},"obj":"Chemical"}],"attributes":[{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"199","span":{"begin":133,"end":141},"obj":"Gene"},{"id":"200","span":{"begin":7,"end":24},"obj":"Species"},{"id":"201","span":{"begin":165,"end":170},"obj":"Species"},{"id":"202","span":{"begin":171,"end":188},"obj":"Species"},{"id":"203","span":{"begin":190,"end":200},"obj":"Species"},{"id":"204","span":{"begin":202,"end":210},"obj":"Species"},{"id":"205","span":{"begin":228,"end":236},"obj":"Species"},{"id":"206","span":{"begin":252,"end":257},"obj":"Species"},{"id":"207","span":{"begin":400,"end":411},"obj":"Species"}],"attributes":[{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"Gene:164045"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Tax:694448"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Tax:9606"},{"id":"A202","pred":"tao:has_database_id","subj":"202","obj":"Tax:694002"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"Tax:2697049"},{"id":"A204","pred":"tao:has_database_id","subj":"204","obj":"Tax:694009"},{"id":"A205","pred":"tao:has_database_id","subj":"205","obj":"Tax:1335626"},{"id":"A206","pred":"tao:has_database_id","subj":"206","obj":"Tax:9606"},{"id":"A207","pred":"tao:has_database_id","subj":"207","obj":"Tax:11118"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T58","span":{"begin":35,"end":293},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" three human coronavirus proteins. Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63). Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coord"}