PMC:7307149 / 5382-6008
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T36 | 265-268 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T37 | 311-315 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T38 | 496-528 | Body_part | denotes | major histocompatibility complex | http://purl.org/sig/ont/fma/fma84079 |
| T39 | 530-533 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T40 | 581-584 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T43 | 49-57 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T44 | 217-225 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 606-614 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T60 | 309-315 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
| T61 | 444-445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T62 | 488-495 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T11 | 325-334 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
| T12 | 488-495 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 143 | 217-227 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 144 | 606-616 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 145 | 49-57 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 193-208 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
| T8 | 325-343 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
| T9 | 496-528 | http://purl.obolibrary.org/obo/GO_0046776 | denotes | major histocompatibility complex |
| T10 | 530-533 | http://purl.obolibrary.org/obo/GO_0046776 | denotes | MHC |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T39 | 0-233 | Sentence | denotes | While the details of the clinical picture of the COVID-19 pandemic continue to emerge, there remain substantial unanswered questions regarding the role of individual genetic variability in the immune response against SARS-CoV-2 (51). |
| T40 | 234-415 | Sentence | denotes | We hypothesize that individual HLA genotypes may differentially induce the T-cell mediated antiviral response and could potentially alter the course of disease and its transmission. |
| T41 | 416-626 | Sentence | denotes | In this study, we performed a comprehensive in silico analysis of viral peptide-major histocompatibility complex (MHC) class I binding affinity across 145 different HLA types for the entire SARS-CoV-2 proteome. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32303592-12472660-65501634 | 229-231 | 12472660 | denotes | 51 |