PMC:7307149 / 12440-12876 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T74","span":{"begin":123,"end":126},"obj":"Body_part"},{"id":"T75","span":{"begin":133,"end":136},"obj":"Body_part"}],"attributes":[{"id":"A74","pred":"fma_id","subj":"T74","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A75","pred":"fma_id","subj":"T75","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T62","span":{"begin":215,"end":223},"obj":"Disease"}],"attributes":[{"id":"A62","pred":"mondo_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T128","span":{"begin":63,"end":70},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T129","span":{"begin":127,"end":128},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T130","span":{"begin":291,"end":296},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T131","span":{"begin":332,"end":339},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T132","span":{"begin":410,"end":417},"obj":"http://purl.obolibrary.org/obo/PR_000018263"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T66","span":{"begin":63,"end":70},"obj":"Chemical"},{"id":"T67","span":{"begin":226,"end":234},"obj":"Chemical"},{"id":"T68","span":{"begin":332,"end":339},"obj":"Chemical"},{"id":"T69","span":{"begin":379,"end":381},"obj":"Chemical"},{"id":"T70","span":{"begin":410,"end":417},"obj":"Chemical"}],"attributes":[{"id":"A66","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A67","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"id":"A68","pred":"chebi_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A69","pred":"chebi_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/CHEBI_29388"},{"id":"A70","pred":"chebi_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}

{"project":"LitCovid-PubTator","denotations":[{"id":"243","span":{"begin":123,"end":128},"obj":"Gene"},{"id":"244","span":{"begin":133,"end":138},"obj":"Gene"},{"id":"247","span":{"begin":215,"end":225},"obj":"Species"}],"attributes":[{"id":"A243","pred":"tao:has_database_id","subj":"243","obj":"Gene:3105"},{"id":"A244","pred":"tao:has_database_id","subj":"244","obj":"Gene:3107"},{"id":"A247","pred":"tao:has_database_id","subj":"247","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}

{"project":"LitCovid-sentences","denotations":[{"id":"T73","span":{"begin":91,"end":249},"obj":"Sentence"},{"id":"T74","span":{"begin":250,"end":383},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ty across the entire proteome, highlighting its most conserved peptide sequences (Fig. 4). Throughout the entire proteome, HLA-A and HLA-C alleles exhibited the relatively largest and smallest capacities to present SARS-CoV-2 antigens, respectively. However, each of the three major class I genes exhibited very similar patterns of peptide presentation across the proteome (Fig. S3). We additionally note that peptide presentation appea"}