PMC:7306567 / 735-1690 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":519,"end":524},"obj":"Body_part"},{"id":"T2","span":{"begin":950,"end":954},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":519,"end":524},"obj":"Body_part"},{"id":"T2","span":{"begin":950,"end":954},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PubTator","denotations":[{"id":"16","span":{"begin":438,"end":451},"obj":"Chemical"},{"id":"17","span":{"begin":184,"end":204},"obj":"Disease"},{"id":"18","span":{"begin":530,"end":551},"obj":"Disease"},{"id":"19","span":{"begin":635,"end":652},"obj":"Disease"},{"id":"20","span":{"begin":667,"end":688},"obj":"Disease"},{"id":"21","span":{"begin":772,"end":780},"obj":"Disease"},{"id":"22","span":{"begin":792,"end":815},"obj":"Disease"},{"id":"23","span":{"begin":930,"end":949},"obj":"Disease"}],"attributes":[{"id":"A16","pred":"tao:has_database_id","subj":"16","obj":"MESH:C012990"},{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"MESH:D012128"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"MESH:D017254"},{"id":"A20","pred":"tao:has_database_id","subj":"20","obj":"MESH:D017254"},{"id":"A21","pred":"tao:has_database_id","subj":"21","obj":"MESH:C000657245"},{"id":"A22","pred":"tao:has_database_id","subj":"22","obj":"MESH:D055732"},{"id":"A23","pred":"tao:has_database_id","subj":"23","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T7","span":{"begin":221,"end":230},"obj":"Disease"},{"id":"T8","span":{"begin":635,"end":652},"obj":"Disease"},{"id":"T9","span":{"begin":772,"end":780},"obj":"Disease"},{"id":"T10","span":{"begin":802,"end":815},"obj":"Disease"},{"id":"T11","span":{"begin":817,"end":821},"obj":"Disease"},{"id":"T12","span":{"begin":930,"end":938},"obj":"Disease"}],"attributes":[{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0021925"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0007163"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T7","span":{"begin":34,"end":35},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T8","span":{"begin":146,"end":147},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T9","span":{"begin":210,"end":211},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T10","span":{"begin":231,"end":235},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T11","span":{"begin":555,"end":556},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T12","span":{"begin":950,"end":954},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T13","span":{"begin":950,"end":954},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T2","span":{"begin":438,"end":451},"obj":"Chemical"},{"id":"T3","span":{"begin":511,"end":514},"obj":"Chemical"}],"attributes":[{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":438,"end":451},"obj":"GlycoEpitope"}],"attributes":[{"id":"A1","pred":"glyco_epitope_db_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T2","span":{"begin":184,"end":204},"obj":"Phenotype"},{"id":"T3","span":{"begin":530,"end":551},"obj":"Phenotype"},{"id":"T4","span":{"begin":667,"end":688},"obj":"Phenotype"}],"attributes":[{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002098"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0002113"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002113"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-sentences","denotations":[{"id":"T8","span":{"begin":0,"end":7},"obj":"Sentence"},{"id":"T9","span":{"begin":8,"end":110},"obj":"Sentence"},{"id":"T10","span":{"begin":111,"end":272},"obj":"Sentence"},{"id":"T11","span":{"begin":273,"end":397},"obj":"Sentence"},{"id":"T12","span":{"begin":398,"end":705},"obj":"Sentence"},{"id":"T13","span":{"begin":706,"end":955},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T7","span":{"begin":184,"end":195},"obj":"UBERON:0001004"},{"id":"T8","span":{"begin":385,"end":396},"obj":"NCBITaxon:5052"},{"id":"T9","span":{"begin":438,"end":451},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T10","span":{"begin":464,"end":475},"obj":"NCBITaxon:5052"},{"id":"T11","span":{"begin":487,"end":502},"obj":"UBERON:0002186"},{"id":"T12","span":{"begin":519,"end":524},"obj":"UBERON:0001977"},{"id":"T13","span":{"begin":530,"end":539},"obj":"UBERON:0002048"},{"id":"T14","span":{"begin":583,"end":594},"obj":"UBERON:0001004"},{"id":"T15","span":{"begin":635,"end":652},"obj":"UBERON:0007196"},{"id":"T16","span":{"begin":667,"end":676},"obj":"UBERON:0002048"},{"id":"T17","span":{"begin":772,"end":780},"obj":"SP_7"},{"id":"T18","span":{"begin":792,"end":801},"obj":"UBERON:0002048"},{"id":"T19","span":{"begin":910,"end":921},"obj":"NCBITaxon:5052"},{"id":"T20","span":{"begin":930,"end":940},"obj":"SP_7"},{"id":"T21","span":{"begin":950,"end":954},"obj":"UBERON:0002048"},{"id":"T75692","span":{"begin":184,"end":195},"obj":"UBERON:0001004"},{"id":"T84443","span":{"begin":385,"end":396},"obj":"NCBITaxon:5052"},{"id":"T34269","span":{"begin":438,"end":451},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T60679","span":{"begin":464,"end":475},"obj":"NCBITaxon:5052"},{"id":"T26342","span":{"begin":487,"end":502},"obj":"UBERON:0002186"},{"id":"T99495","span":{"begin":519,"end":524},"obj":"UBERON:0001977"},{"id":"T26592","span":{"begin":530,"end":539},"obj":"UBERON:0002048"},{"id":"T63277","span":{"begin":583,"end":594},"obj":"UBERON:0001004"},{"id":"T58436","span":{"begin":635,"end":652},"obj":"UBERON:0007196"},{"id":"T13528","span":{"begin":667,"end":676},"obj":"UBERON:0002048"},{"id":"T41590","span":{"begin":772,"end":780},"obj":"SP_7"},{"id":"T91554","span":{"begin":792,"end":801},"obj":"UBERON:0002048"},{"id":"T48258","span":{"begin":910,"end":921},"obj":"NCBITaxon:5052"},{"id":"T27026","span":{"begin":930,"end":940},"obj":"SP_7"},{"id":"T42156","span":{"begin":950,"end":954},"obj":"UBERON:0002048"}],"text":"Results\nSince IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors. The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission. In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus. Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset. The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung."}