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PMC:7306567 / 735-1690 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 519-524 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T2 950-954 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 519-524 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 950-954 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
16 438-451 Chemical denotes galactomannan MESH:C012990
17 184-204 Disease denotes respiratory distress MESH:D012128
18 530-551 Disease denotes pulmonary infiltrates MESH:D017254
19 635-652 Disease denotes tracheobronchitis
20 667-688 Disease denotes pulmonary infiltrates MESH:D017254
21 772-780 Disease denotes COVID-19 MESH:C000657245
22 792-815 Disease denotes pulmonary aspergillosis MESH:D055732
23 930-949 Disease denotes SARS-CoV-2-infected MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 221-230 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 635-652 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T9 772-780 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 802-815 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T11 817-821 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T12 930-938 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 146-147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 210-211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 231-235 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T11 555-556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 950-954 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T13 950-954 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 438-451 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T3 511-514 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 438-451 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 184-204 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T3 530-551 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T4 667-688 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-7 Sentence denotes Results
T9 8-110 Sentence denotes Since IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors.
T10 111-272 Sentence denotes The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission.
T11 273-397 Sentence denotes In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus.
T12 398-705 Sentence denotes Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset.
T13 706-955 Sentence denotes The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T7 184-195 UBERON:0001004 denotes respiratory
T8 385-396 NCBITaxon:5052 denotes Aspergillus
T9 438-451 CHEBI:27680;CHEBI:27680 denotes galactomannan
T10 464-475 NCBITaxon:5052 denotes Aspergillus
T11 487-502 UBERON:0002186 denotes bronchoalveolar
T12 519-524 UBERON:0001977 denotes serum
T13 530-539 UBERON:0002048 denotes pulmonary
T14 583-594 UBERON:0001004 denotes respiratory
T15 635-652 UBERON:0007196 denotes tracheobronchitis
T16 667-676 UBERON:0002048 denotes pulmonary
T17 772-780 SP_7 denotes COVID-19
T18 792-801 UBERON:0002048 denotes pulmonary
T19 910-921 NCBITaxon:5052 denotes Aspergillus
T20 930-940 SP_7 denotes SARS-CoV-2
T21 950-954 UBERON:0002048 denotes lung
T75692 184-195 UBERON:0001004 denotes respiratory
T84443 385-396 NCBITaxon:5052 denotes Aspergillus
T34269 438-451 CHEBI:27680;CHEBI:27680 denotes galactomannan
T60679 464-475 NCBITaxon:5052 denotes Aspergillus
T26342 487-502 UBERON:0002186 denotes bronchoalveolar
T99495 519-524 UBERON:0001977 denotes serum
T26592 530-539 UBERON:0002048 denotes pulmonary
T63277 583-594 UBERON:0001004 denotes respiratory
T58436 635-652 UBERON:0007196 denotes tracheobronchitis
T13528 667-676 UBERON:0002048 denotes pulmonary
T41590 772-780 SP_7 denotes COVID-19
T91554 792-801 UBERON:0002048 denotes pulmonary
T48258 910-921 NCBITaxon:5052 denotes Aspergillus
T27026 930-940 SP_7 denotes SARS-CoV-2
T42156 950-954 UBERON:0002048 denotes lung