PMC:7306567 / 22869-23406 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T28","span":{"begin":83,"end":88},"obj":"Body_part"},{"id":"T29","span":{"begin":200,"end":206},"obj":"Body_part"},{"id":"T30","span":{"begin":312,"end":317},"obj":"Body_part"},{"id":"T31","span":{"begin":485,"end":491},"obj":"Body_part"}],"attributes":[{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma312401"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T24","span":{"begin":83,"end":88},"obj":"Body_part"},{"id":"T25","span":{"begin":200,"end":206},"obj":"Body_part"},{"id":"T26","span":{"begin":312,"end":317},"obj":"Body_part"},{"id":"T27","span":{"begin":485,"end":491},"obj":"Body_part"}],"attributes":[{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A25","pred":"uberon_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A26","pred":"uberon_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A27","pred":"uberon_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T98","span":{"begin":42,"end":47},"obj":"Disease"}],"attributes":[{"id":"A98","pred":"mondo_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/MONDO_0043839"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T148","span":{"begin":9,"end":15},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T149","span":{"begin":253,"end":254},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T150","span":{"begin":382,"end":383},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T148","span":{"begin":89,"end":91},"obj":"Chemical"},{"id":"T150","span":{"begin":107,"end":110},"obj":"Chemical"},{"id":"T151","span":{"begin":111,"end":113},"obj":"Chemical"},{"id":"T153","span":{"begin":138,"end":141},"obj":"Chemical"},{"id":"T154","span":{"begin":318,"end":320},"obj":"Chemical"},{"id":"T156","span":{"begin":336,"end":339},"obj":"Chemical"},{"id":"T157","span":{"begin":340,"end":342},"obj":"Chemical"},{"id":"T159","span":{"begin":367,"end":370},"obj":"Chemical"}],"attributes":[{"id":"A148","pred":"chebi_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A149","pred":"chebi_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A152","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A154","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A155","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A156","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A157","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A158","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T14","span":{"begin":89,"end":91},"obj":"GlycoEpitope"},{"id":"T15","span":{"begin":111,"end":113},"obj":"GlycoEpitope"},{"id":"T16","span":{"begin":318,"end":320},"obj":"GlycoEpitope"},{"id":"T17","span":{"begin":340,"end":342},"obj":"GlycoEpitope"}],"attributes":[{"id":"A14","pred":"glyco_epitope_db_id","subj":"T14","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A15","pred":"glyco_epitope_db_id","subj":"T15","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A16","pred":"glyco_epitope_db_id","subj":"T16","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A17","pred":"glyco_epitope_db_id","subj":"T17","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T30","span":{"begin":256,"end":276},"obj":"Phenotype"}],"attributes":[{"id":"A30","pred":"hp_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/HP_0002113"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-sentences","denotations":[{"id":"T151","span":{"begin":0,"end":47},"obj":"Sentence"},{"id":"T152","span":{"begin":48,"end":82},"obj":"Sentence"},{"id":"T153","span":{"begin":83,"end":103},"obj":"Sentence"},{"id":"T154","span":{"begin":104,"end":106},"obj":"Sentence"},{"id":"T155","span":{"begin":107,"end":125},"obj":"Sentence"},{"id":"T156","span":{"begin":126,"end":128},"obj":"Sentence"},{"id":"T157","span":{"begin":129,"end":149},"obj":"Sentence"},{"id":"T158","span":{"begin":150,"end":152},"obj":"Sentence"},{"id":"T159","span":{"begin":153,"end":187},"obj":"Sentence"},{"id":"T160","span":{"begin":188,"end":190},"obj":"Sentence"},{"id":"T161","span":{"begin":191,"end":214},"obj":"Sentence"},{"id":"T162","span":{"begin":215,"end":217},"obj":"Sentence"},{"id":"T163","span":{"begin":218,"end":255},"obj":"Sentence"},{"id":"T164","span":{"begin":256,"end":276},"obj":"Sentence"},{"id":"T165","span":{"begin":277,"end":311},"obj":"Sentence"},{"id":"T166","span":{"begin":312,"end":332},"obj":"Sentence"},{"id":"T167","span":{"begin":333,"end":335},"obj":"Sentence"},{"id":"T168","span":{"begin":336,"end":354},"obj":"Sentence"},{"id":"T169","span":{"begin":355,"end":357},"obj":"Sentence"},{"id":"T170","span":{"begin":358,"end":378},"obj":"Sentence"},{"id":"T171","span":{"begin":379,"end":381},"obj":"Sentence"},{"id":"T172","span":{"begin":382,"end":384},"obj":"Sentence"},{"id":"T173","span":{"begin":385,"end":440},"obj":"Sentence"},{"id":"T174","span":{"begin":441,"end":475},"obj":"Sentence"},{"id":"T175","span":{"begin":476,"end":499},"obj":"Sentence"},{"id":"T176","span":{"begin":500,"end":502},"obj":"Sentence"},{"id":"T177","span":{"begin":503,"end":537},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T187","span":{"begin":83,"end":88},"obj":"UBERON:0001977"},{"id":"T188","span":{"begin":162,"end":170},"obj":"UBERON:0003126"},{"id":"T189","span":{"begin":200,"end":206},"obj":"UBERON:0007311"},{"id":"T190","span":{"begin":256,"end":265},"obj":"UBERON:0002048"},{"id":"T191","span":{"begin":312,"end":317},"obj":"UBERON:0001977"},{"id":"T192","span":{"begin":485,"end":491},"obj":"UBERON:0007311"},{"id":"T193","span":{"begin":512,"end":520},"obj":"UBERON:0003126"},{"id":"T49668","span":{"begin":83,"end":88},"obj":"UBERON:0001977"},{"id":"T42816","span":{"begin":162,"end":170},"obj":"UBERON:0003126"},{"id":"T82825","span":{"begin":200,"end":206},"obj":"UBERON:0007311"},{"id":"T7327","span":{"begin":256,"end":265},"obj":"UBERON:0002048"},{"id":"T86954","span":{"begin":312,"end":317},"obj":"UBERON:0001977"},{"id":"T76040","span":{"begin":485,"end":491},"obj":"UBERON:0007311"},{"id":"T7513","span":{"begin":512,"end":520},"obj":"UBERON:0003126"}],"text":"Probable Airway plaque, pseudomembrane or ulcer\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nor\nPositive tracheal aspirate culture\nor\nPositive sputum culture\nor\nHyphae consistent with Aspergillus A: Pulmonary infiltrate\nand at least one of the following:\nSerum GM index \u003e 0.5\nor\nBAL GM index ≥ 1.0\nor\nPositive BAL culture\nOR\nB: Cavitating infiltrate (not attributed to another cause)\nand at least one of the following:\nPositive sputum culture\nor\nPositive tracheal aspirate culture"}