PMC:7306567 / 22869-23406
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T28 | 83-88 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
| T29 | 200-206 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T30 | 312-317 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
| T31 | 485-491 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T24 | 83-88 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T25 | 200-206 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T26 | 312-317 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T27 | 485-491 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T98 | 42-47 | Disease | denotes | ulcer | http://purl.obolibrary.org/obo/MONDO_0043839 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T148 | 9-15 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | Airway |
| T149 | 253-254 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T150 | 382-383 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T148 | 89-91 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T150 | 107-110 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T151 | 111-113 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T153 | 138-141 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T154 | 318-320 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T156 | 336-339 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T157 | 340-342 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T159 | 367-370 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T14 | 89-91 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T15 | 111-113 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T16 | 318-320 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T17 | 340-342 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T30 | 256-276 | Phenotype | denotes | Pulmonary infiltrate | http://purl.obolibrary.org/obo/HP_0002113 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T151 | 0-47 | Sentence | denotes | Probable Airway plaque, pseudomembrane or ulcer |
| T152 | 48-82 | Sentence | denotes | and at least one of the following: |
| T153 | 83-103 | Sentence | denotes | Serum GM index > 0.5 |
| T154 | 104-106 | Sentence | denotes | or |
| T155 | 107-125 | Sentence | denotes | BAL GM index ≥ 1.0 |
| T156 | 126-128 | Sentence | denotes | or |
| T157 | 129-149 | Sentence | denotes | Positive BAL culture |
| T158 | 150-152 | Sentence | denotes | or |
| T159 | 153-187 | Sentence | denotes | Positive tracheal aspirate culture |
| T160 | 188-190 | Sentence | denotes | or |
| T161 | 191-214 | Sentence | denotes | Positive sputum culture |
| T162 | 215-217 | Sentence | denotes | or |
| T163 | 218-255 | Sentence | denotes | Hyphae consistent with Aspergillus A: |
| T164 | 256-276 | Sentence | denotes | Pulmonary infiltrate |
| T165 | 277-311 | Sentence | denotes | and at least one of the following: |
| T166 | 312-332 | Sentence | denotes | Serum GM index > 0.5 |
| T167 | 333-335 | Sentence | denotes | or |
| T168 | 336-354 | Sentence | denotes | BAL GM index ≥ 1.0 |
| T169 | 355-357 | Sentence | denotes | or |
| T170 | 358-378 | Sentence | denotes | Positive BAL culture |
| T171 | 379-381 | Sentence | denotes | OR |
| T172 | 382-384 | Sentence | denotes | B: |
| T173 | 385-440 | Sentence | denotes | Cavitating infiltrate (not attributed to another cause) |
| T174 | 441-475 | Sentence | denotes | and at least one of the following: |
| T175 | 476-499 | Sentence | denotes | Positive sputum culture |
| T176 | 500-502 | Sentence | denotes | or |
| T177 | 503-537 | Sentence | denotes | Positive tracheal aspirate culture |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T187 | 83-88 | UBERON:0001977 | denotes | Serum |
| T188 | 162-170 | UBERON:0003126 | denotes | tracheal |
| T189 | 200-206 | UBERON:0007311 | denotes | sputum |
| T190 | 256-265 | UBERON:0002048 | denotes | Pulmonary |
| T191 | 312-317 | UBERON:0001977 | denotes | Serum |
| T192 | 485-491 | UBERON:0007311 | denotes | sputum |
| T193 | 512-520 | UBERON:0003126 | denotes | tracheal |
| T49668 | 83-88 | UBERON:0001977 | denotes | Serum |
| T42816 | 162-170 | UBERON:0003126 | denotes | tracheal |
| T82825 | 200-206 | UBERON:0007311 | denotes | sputum |
| T7327 | 256-265 | UBERON:0002048 | denotes | Pulmonary |
| T86954 | 312-317 | UBERON:0001977 | denotes | Serum |
| T76040 | 485-491 | UBERON:0007311 | denotes | sputum |
| T7513 | 512-520 | UBERON:0003126 | denotes | tracheal |