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PMC:7295558 / 1797-3008 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T20 127-138 NCBITaxon:11118 denotes coronavirus
T21 153-161 SP_7 denotes COVID-19
T22 186-197 NCBITaxon:11118 denotes coronavirus
T23 198-210 SP_7 denotes severe acute
T24 211-222 SP_7;UBERON:0001004 denotes respiratory
T25 223-245 SP_7 denotes syndrome coronavirus 2
T26 247-257 SP_7 denotes SARS-CoV-2
T27 369-377 SP_7 denotes COVID-19
T28 546-554 SP_7 denotes COVID-19
T29 587-598 UBERON:0001004 denotes respiratory
T30 707-728 UBERON:0004535 denotes cardiovascular system
T31 836-850 UBERON:0004535 denotes cardiovascular
T32 913-926 UBERON:0000948 denotes Transthoracic
T33 977-987 UBERON:0002349 denotes myocardial
T34 1047-1063 UBERON:0002084 denotes left ventricular
T35 1202-1210 SP_7 denotes COVID-19
T20851 127-138 NCBITaxon:11118 denotes coronavirus
T97341 153-161 SP_7 denotes COVID-19
T61228 186-197 NCBITaxon:11118 denotes coronavirus
T9029 198-210 SP_7 denotes severe acute
T75673 211-222 SP_7;UBERON:0001004 denotes respiratory
T36620 223-245 SP_7 denotes syndrome coronavirus 2
T18134 247-257 SP_7 denotes SARS-CoV-2
T33325 369-377 SP_7 denotes COVID-19
T75404 546-554 SP_7 denotes COVID-19
T53069 587-598 UBERON:0001004 denotes respiratory
T43876 707-728 UBERON:0004535 denotes cardiovascular system
T85327 836-850 UBERON:0004535 denotes cardiovascular
T80970 913-926 UBERON:0000948 denotes Transthoracic
T33822 977-987 UBERON:0002349 denotes myocardial
T16632 1047-1063 UBERON:0002084 denotes left ventricular
T7327 1202-1210 SP_7 denotes COVID-19

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 707-728 Body_part denotes cardiovascular system http://purl.org/sig/ont/fma/fma7161

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 707-728 Body_part denotes cardiovascular system http://purl.obolibrary.org/obo/UBERON_0004535

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 46-55 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 127-151 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T14 153-161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 198-245 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T16 198-231 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 247-255 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 369-377 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 546-554 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 836-864 Disease denotes cardiovascular disease (CVD) http://purl.obolibrary.org/obo/MONDO_0004995
T21 1202-1210 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 18-19 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 263-266 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 315-316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 338-340 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T19 647-650 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 707-728 http://purl.obolibrary.org/obo/UBERON_0004535 denotes cardiovascular system
T21 707-728 http://www.ebi.ac.uk/efo/EFO_0000791 denotes cardiovascular system
T22 883-886 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 887-888 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 181-185 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T6 877-882 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T22 0-112 Sentence denotes In December 2019, a wave of cases of atypical pneumonia emerged from Wuhan City, Hubei Province in China [1, 2].
T23 113-341 Sentence denotes This disease (coronavirus disease 2019 (COVID-19)) is caused by the beta coronavirus severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and has rapidly spread around the world, being declared a pandemic since March 11.
T24 342-536 Sentence denotes Early reports suggest that COVID-19 is generally mild; nevertheless, up to 19% of cases will require in-hospital management, and 6% will need to be admitted to the intensive care unit (ICU) [3].
T25 537-735 Sentence denotes Although COVID-19 manifests in most patients with respiratory symptoms, other presentations can occur, and it has been suggested that there could be direct damage to the cardiovascular system [4-6].
T26 736-912 Sentence denotes In addition, increasing concern exists regarding the severity of the disease in patients with prior cardiovascular disease (CVD), since this group has a worse prognosis [7, 8].
T27 913-1129 Sentence denotes Transthoracic echocardiography (TTE) allows us to detect subtle myocardial damage with tools that are associated with prognosis, e.g. left ventricular ejection fraction (LVEF) or global longitudinal strain (GLS) [9].
T28 1130-1211 Sentence denotes Herein, we present the echocardiographic findings in four patients with COVID-19.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 46-55 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 836-858 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
54 181-197 Species denotes beta coronavirus Tax:694002
55 198-245 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
56 247-257 Species denotes SARS-CoV-2 Tax:2697049
57 573-581 Species denotes patients Tax:9606
58 816-824 Species denotes patients Tax:9606
59 1188-1196 Species denotes patients Tax:9606
60 46-55 Disease denotes pneumonia MESH:D011014
61 127-151 Disease denotes coronavirus disease 2019 MESH:C000657245
62 153-161 Disease denotes COVID-19 MESH:C000657245
63 369-377 Disease denotes COVID-19 MESH:C000657245
64 546-554 Disease denotes COVID-19 MESH:C000657245
65 587-607 Disease denotes respiratory symptoms MESH:D012818
66 836-858 Disease denotes cardiovascular disease MESH:D002318
67 860-863 Disease denotes CVD MESH:D002318
68 970-994 Disease denotes subtle myocardial damage MESH:D009202
69 1202-1210 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32595812-32031570-18405858 106-107 32031570 denotes 1
32595812-32015507-18405859 109-110 32015507 denotes 2
32595812-32091533-18405860 533-534 32091533 denotes 3
32595812-31986264-18405861 730-731 31986264 denotes 4
32595812-32211816-18405861 730-731 32211816 denotes 4
32595812-32139904-18405862 909-910 32139904 denotes 8
32595812-30627581-18405863 1126-1127 30627581 denotes 9