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PMC:7295558 / 12607-13862 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T112 124-131 UBERON:0000948 denotes cardiac
T113 162-172 UBERON:0002349 denotes myocardial
T114 269-279 UBERON:0002349 denotes myocardial
T115 334-342 SP_7 denotes COVID-19
T116 353-363 UBERON:0002349 denotes myocardial
T117 442-451 UBERON:0003126 denotes tricuspid
T118 471-480 UBERON:0003126 denotes tricuspid
T119 517-522 UBERON:0000178 denotes blood
T120 582-590 SP_10 denotes SARS-CoV
T121 695-703 SP_7 denotes COVID-19
T122 715-727 GO:0050817 denotes coagulopathy
T123 833-843 GO:0007596 denotes thrombotic
T124 875-883 SP_7 denotes COVID-19
T125 892-901 UBERON:0002048 denotes pulmonary
T126 1045-1054 UBERON:0002048 denotes pulmonary
T127 1164-1182 GO:0007596 denotes thromboprophylaxis
T128 1216-1224 UBERON:0010210 denotes thrombus
T63600 124-131 UBERON:0000948 denotes cardiac
T61077 162-172 UBERON:0002349 denotes myocardial
T88255 269-279 UBERON:0002349 denotes myocardial
T99292 334-342 SP_7 denotes COVID-19
T27430 353-363 UBERON:0002349 denotes myocardial
T28250 442-451 UBERON:0003126 denotes tricuspid
T15014 471-480 UBERON:0003126 denotes tricuspid
T8599 517-522 UBERON:0000178 denotes blood
T57055 582-590 SP_10 denotes SARS-CoV
T53160 695-703 SP_7 denotes COVID-19
T45664 715-727 GO:0050817 denotes coagulopathy
T77693 833-843 GO:0007596 denotes thrombotic
T68410 875-883 SP_7 denotes COVID-19
T1894 892-901 UBERON:0002048 denotes pulmonary
T50114 1045-1054 UBERON:0002048 denotes pulmonary
T22379 1164-1182 GO:0007596 denotes thromboprophylaxis
T60869 1216-1224 UBERON:0010210 denotes thrombus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 39-48 Body_part denotes troponins http://purl.org/sig/ont/fma/fma62338
T33 517-522 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T16 517-522 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 1241-1246 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 148-150 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T75 152-154 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T76 334-342 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 471-494 Disease denotes tricuspid regurgitation http://purl.obolibrary.org/obo/MONDO_0002870
T78 582-600 Disease denotes SARS-CoV infection http://purl.obolibrary.org/obo/MONDO_0005091
T79 591-600 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T80 622-634 Disease denotes endocarditis http://purl.obolibrary.org/obo/MONDO_0005025
T81 695-703 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 715-727 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T83 729-732 Disease denotes CAC http://purl.obolibrary.org/obo/MONDO_0001531
T84 751-769 Disease denotes hypercoagulability http://purl.obolibrary.org/obo/MONDO_0002305
T85 875-883 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 892-910 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T87 1216-1224 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T134 155-157 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T135 308-309 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 440-441 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 517-522 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T138 517-522 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T139 693-694 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 770-773 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T141 819-820 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 947-948 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 1214-1215 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 1241-1246 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T7 152-157 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T145 0-212 Sentence denotes In this series, serial measurements of troponins or D-dimer determination were not available, but increased levels of other cardiac markers such as CK, CK-MB and myocardial dysfunction detected by TTE were found.
T146 213-257 Sentence denotes None of our patients had previous known CVD.
T147 258-415 Sentence denotes Therefore, myocardial dysfunction could represent a direct manifestation of COVID-19, and also myocardial abnormalities seen in critically ill patients [13].
T148 416-532 Sentence denotes One of our patients had a tricuspid vegetation, severe tricuspid regurgitation and repeated negative blood cultures.
T149 533-666 Sentence denotes Interestingly, previous reports in subjects with SARS-CoV infection show the presence of endocarditis with marantic vegetations [14].
T150 667-920 Sentence denotes Recently, the presence of a COVID-19-associated coagulopathy (CAC) characterized by hypercoagulability has been proposed, and recent studies have found a presence of thrombotic events in 31% of subjects with COVID-19, mainly pulmonary embolism [15, 16].
T151 921-1119 Sentence denotes We were unable to perform a pathologic evaluation of our subject’s vegetation for this report, and computed tomography (CT)-pulmonary angiography was not available because of his clinical condition.
T152 1120-1255 Sentence denotes Although all of our subjects were receiving thromboprophylaxis, the possibility of this being a thrombus attached to the valve remains.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T50 471-494 Phenotype denotes tricuspid regurgitation http://purl.obolibrary.org/obo/HP_0005180
T51 622-634 Phenotype denotes endocarditis http://purl.obolibrary.org/obo/HP_0100584
T52 715-727 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256
T53 729-732 Phenotype denotes CAC http://purl.obolibrary.org/obo/HP_0003256
T54 751-769 Phenotype denotes hypercoagulability http://purl.obolibrary.org/obo/HP_0100724
T55 892-910 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
248 148-150 Gene denotes CK Gene:51727
249 225-233 Species denotes patients Tax:9606
250 401-409 Species denotes patients Tax:9606
251 427-435 Species denotes patients Tax:9606
252 162-184 Disease denotes myocardial dysfunction MESH:D009202
253 253-256 Disease denotes CVD MESH:D002318
254 269-291 Disease denotes myocardial dysfunction MESH:D009202
255 334-342 Disease denotes COVID-19 MESH:C000657245
256 353-377 Disease denotes myocardial abnormalities MESH:D009202
257 386-400 Disease denotes critically ill MESH:D016638
258 471-494 Disease denotes tricuspid regurgitation MESH:D014262
259 582-600 Disease denotes SARS-CoV infection MESH:C000657245
260 622-634 Disease denotes endocarditis MESH:D004696
261 695-703 Disease denotes COVID-19 MESH:C000657245
262 715-727 Disease denotes coagulopathy MESH:D001778
263 751-769 Disease denotes hypercoagulability MESH:D019851
264 833-843 Disease denotes thrombotic MESH:D013927
265 875-883 Disease denotes COVID-19 MESH:C000657245
266 892-910 Disease denotes pulmonary embolism MESH:D011655
267 1216-1224 Disease denotes thrombus MESH:D013927

2_test

Id Subject Object Predicate Lexical cue
32595812-30521759-18405867 411-413 30521759 denotes 13
32595812-14736283-18405868 662-664 14736283 denotes 14
32595812-32302453-18405869 916-918 32302453 denotes 16