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PMC:7294857 / 18992-21541 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T188 107-111 GO:0016265 denotes died
T189 115-123 SP_7 denotes COVID-19
T190 153-158 UBERON:0000170 denotes lungs
T191 282-287 UBERON:0000170 denotes lungs
T192 343-350 UBERON:0002185 denotes bronchi
T193 381-390 UBERON:0002048 denotes pulmonary
T194 391-403 UBERON:0005169 denotes interstitial
T195 501-508 UBERON:0000055 denotes vessels
T196 549-554 UBERON:0000060 denotes walls
T197 588-600 UBERON:0010161 denotes blood vessel
T198 645-652 UBERON:0000055 denotes vessels
T199 676-687 CL:0000542 denotes lymphocytes
T200 689-701 CL:0000786 denotes plasma cells
T201 703-714 CL:0000235 denotes macrophages
T202 756-765 UBERON:0002031 denotes bronchial
T203 766-771 UBERON:0000060 denotes walls
T204 787-798 CL:0002063 denotes pneumocytes
T205 849-859 UBERON:0000483 denotes epithelium
T206 875-889 GO:0005634;CL:0000647 denotes Multinucleated
T207 890-901 CL:0000647 denotes giant cells
T208 923-928 GO:0019012;NCBITaxon:10239 denotes viral
T209 929-939 GO:0016234 denotes inclusions
T210 1056-1064 SP_7 denotes COVID-19
T211 1088-1096 UBERON:0003215 denotes alveolar
T212 1204-1216 UBERON:0005169 denotes interstitial
T213 1233-1251 CL:0009002 denotes inflammatory cells
T214 1253-1264 CL:0000322 denotes Pneumocytes
T215 1304-1310 GO:0005634 denotes nuclei
T216 1321-1330 GO:0005737 denotes cytoplasm
T217 1346-1354 GO:0005730 denotes nucleoli
T218 1367-1372 NCBITaxon:10239 denotes viral
T219 1480-1488 SP_7 denotes COVID-19
T220 1513-1521 UBERON:0003215 denotes alveolar
T221 1533-1550 CL:0002063 denotes type 2 pneumocyte
T222 1600-1607 UBERON:0003215 denotes alveoli
T223 1613-1625 UBERON:0005169 denotes interstitial
T224 1648-1660 UBERON:0005169 denotes Interstitial
T225 1677-1695 CL:0009002 denotes inflammatory cells
T226 1773-1778 UBERON:0000170 denotes lungs
T227 1876-1883 UBERON:0002185 denotes bronchi
T228 1958-1967 UBERON:0002048 denotes pulmonary
T229 1968-1980 UBERON:0005169 denotes interstitial
T230 2021-2028 UBERON:0000055 denotes vessels
T231 2122-2140 CL:0002063 denotes Type 2 pneumocytes
T232 2150-2163 CL:0002228 denotes primary cells
T233 2184-2190 GO:0005634 denotes nuclei
T234 2221-2229 GO:0005730 denotes nucleoli
T235 2272-2282 UBERON:0000483 denotes epithelium
T236 2309-2327 CL:0009002 denotes inflammatory cells
T237 2332-2343 CL:0000542 denotes lymphocytes
T238 2345-2357 CL:0000786 denotes plasma cells
T239 2359-2370 CL:0000235 denotes macrophages
T240 2424-2438 GO:0005634;CL:0000647 denotes Multinucleated
T241 2439-2450 CL:0000647 denotes giant cells
T242 2515-2531 GO:0005737 denotes intracytoplasmic
T243 2532-2537 NCBITaxon:10239 denotes viral
T244 2538-2548 GO:0016234 denotes inclusions
T24275 107-111 GO:0016265 denotes died
T98372 115-123 SP_7 denotes COVID-19
T23763 153-158 UBERON:0000170 denotes lungs
T8778 282-287 UBERON:0000170 denotes lungs
T87959 343-350 UBERON:0002185 denotes bronchi
T47204 381-390 UBERON:0002048 denotes pulmonary
T24153 391-403 UBERON:0005169 denotes interstitial
T91741 501-508 UBERON:0000055 denotes vessels
T96481 549-554 UBERON:0000060 denotes walls
T24605 588-600 UBERON:0010161 denotes blood vessel
T16360 645-652 UBERON:0000055 denotes vessels
T13202 676-687 CL:0000542 denotes lymphocytes
T90584 689-701 CL:0000786 denotes plasma cells
T34678 703-714 CL:0000235 denotes macrophages
T9756 756-765 UBERON:0002031 denotes bronchial
T11889 766-771 UBERON:0000060 denotes walls
T58828 787-798 CL:0002063 denotes pneumocytes
T76576 849-859 UBERON:0000483 denotes epithelium
T24672 875-889 GO:0005634;CL:0000647 denotes Multinucleated
T12826 890-901 CL:0000647 denotes giant cells
T51805 923-928 GO:0019012;NCBITaxon:10239 denotes viral
T57484 929-939 GO:0016234 denotes inclusions
T47421 1056-1064 SP_7 denotes COVID-19
T46727 1088-1096 UBERON:0003215 denotes alveolar
T37766 1204-1216 UBERON:0005169 denotes interstitial
T86088 1233-1251 CL:0009002 denotes inflammatory cells
T95491 1253-1264 CL:0000322 denotes Pneumocytes
T61316 1304-1310 GO:0005634 denotes nuclei
T22373 1321-1330 GO:0005737 denotes cytoplasm
T42057 1346-1354 GO:0005730 denotes nucleoli
T32628 1367-1372 NCBITaxon:10239 denotes viral
T44237 1480-1488 SP_7 denotes COVID-19
T72664 1513-1521 UBERON:0003215 denotes alveolar
T72876 1533-1550 CL:0002063 denotes type 2 pneumocyte
T5697 1600-1607 UBERON:0003215 denotes alveoli
T79835 1613-1625 UBERON:0005169 denotes interstitial
T18772 1648-1660 UBERON:0005169 denotes Interstitial
T15615 1677-1695 CL:0009002 denotes inflammatory cells
T72176 1773-1778 UBERON:0000170 denotes lungs
T65844 1876-1883 UBERON:0002185 denotes bronchi
T80031 1958-1967 UBERON:0002048 denotes pulmonary
T60983 1968-1980 UBERON:0005169 denotes interstitial
T69337 2021-2028 UBERON:0000055 denotes vessels
T4033 2122-2140 CL:0002063 denotes Type 2 pneumocytes
T11198 2150-2163 CL:0002228 denotes primary cells
T25598 2184-2190 GO:0005634 denotes nuclei
T7755 2221-2229 GO:0005730 denotes nucleoli
T78766 2272-2282 UBERON:0000483 denotes epithelium
T98336 2309-2327 CL:0009002 denotes inflammatory cells
T70700 2332-2343 CL:0000542 denotes lymphocytes
T49752 2345-2357 CL:0000786 denotes plasma cells
T4441 2359-2370 CL:0000235 denotes macrophages
T64868 2424-2438 GO:0005634;CL:0000647 denotes Multinucleated
T63389 2439-2450 CL:0000647 denotes giant cells
T95014 2515-2531 GO:0005737 denotes intracytoplasmic
T53327 2532-2537 NCBITaxon:10239 denotes viral
T58323 2538-2548 GO:0016234 denotes inclusions

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 153-158 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T55 282-287 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T56 588-600 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T57 676-687 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T58 689-701 Body_part denotes plasma cells http://purl.org/sig/ont/fma/fma70574
T59 689-695 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T60 696-701 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T61 703-714 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T62 756-771 Body_part denotes bronchial walls http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T64 780-798 Body_part denotes type 2 pneumocytes http://purl.org/sig/ont/fma/fma62501
T65 849-859 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T66 896-901 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T67 1088-1096 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T68 1246-1251 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T69 1253-1264 Body_part denotes Pneumocytes http://purl.org/sig/ont/fma/fma62499
T70 1321-1330 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T71 1513-1521 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T72 1533-1550 Body_part denotes type 2 pneumocyte http://purl.org/sig/ont/fma/fma62501
T73 1690-1695 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T74 1773-1778 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T75 1898-1902 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T76 2122-2140 Body_part denotes Type 2 pneumocytes http://purl.org/sig/ont/fma/fma62501
T77 2158-2163 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T78 2272-2282 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T79 2322-2327 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T80 2332-2343 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T81 2345-2357 Body_part denotes plasma cells http://purl.org/sig/ont/fma/fma70574
T82 2345-2351 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T83 2352-2357 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T84 2359-2370 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T85 2445-2450 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T30 343-350 Body_part denotes bronchi http://purl.obolibrary.org/obo/UBERON_0002185
T31 501-508 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T32 588-600 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T33 588-593 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 594-600 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T35 645-652 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T36 849-859 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T37 1876-1883 Body_part denotes bronchi http://purl.obolibrary.org/obo/UBERON_0002185
T38 1898-1902 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T39 2021-2028 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T40 2272-2282 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T95 115-123 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 381-412 Disease denotes pulmonary interstitial fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T97 1056-1064 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 1480-1488 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 1551-1562 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T100 1958-1989 Disease denotes pulmonary interstitial fibrosis http://purl.obolibrary.org/obo/MONDO_0002771

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T131 23-24 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T132 153-158 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T133 282-287 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T134 472-473 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 501-508 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T136 588-600 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T137 588-600 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T138 645-652 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T139 689-701 http://purl.obolibrary.org/obo/CL_0000786 denotes plasma cells
T140 849-859 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T141 896-901 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T142 960-962 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T143 1191-1199 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T144 1246-1251 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T145 1392-1394 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T146 1690-1695 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T147 1773-1778 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T148 2021-2028 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T149 2158-2163 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T150 2272-2282 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T151 2322-2327 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T152 2345-2357 http://purl.obolibrary.org/obo/CL_0000786 denotes plasma cells
T153 2392-2393 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T154 2445-2450 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T49 1304-1310 Chemical denotes nuclei http://purl.obolibrary.org/obo/CHEBI_33252
T50 2184-2190 Chemical denotes nuclei http://purl.obolibrary.org/obo/CHEBI_33252

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T77 1082-1105 Phenotype denotes ffuse alveolar damage b http://purl.obolibrary.org/obo/HP_0033006
T78 1507-1530 Phenotype denotes ffuse alveolar damage a http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 213-221 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T5 213-221 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T6 213-221 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T7 213-221 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T8 588-607 http://purl.obolibrary.org/obo/GO_0072554 denotes blood vessel; lumen
T9 744-752 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T10 744-752 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T11 744-752 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T12 744-752 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T13 1166-1175 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T14 1820-1828 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T15 1820-1828 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T16 1820-1828 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T17 1820-1828 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T159 0-22 Sentence denotes Pathological Findings:
T160 23-124 Sentence denotes A study conducted by Luo W, et al. based on the autopsy findings of the patient who died of COVID-19.
T161 125-288 Sentence denotes On gross examination of the lungs, the surface appears diffusely congested, hemorrhagic necrosis was evident and was more marked in the outer regions of the lungs.
T162 289-351 Sentence denotes Mucinous and hemorrhagic exudates were present in the bronchi.
T163 352-451 Sentence denotes On histopathology, extensive pulmonary interstitial fibrosis with hyaline degeneration was evident.
T164 452-494 Sentence denotes There were signs of a hemorrhagic infarct.
T165 495-653 Sentence denotes Small vessels showed severe congestion, thickening of walls and occlusion or stenosis of the blood vessel; lumen and microthrombi were present in the vessels.
T166 654-726 Sentence denotes Focal infiltration of lymphocytes, plasma cells, macrophages was marked.
T167 727-772 Sentence denotes There was marked necrosis of bronchial walls.
T168 773-874 Sentence denotes Mainly type 2 pneumocytes were affected, and various metaplastic changes of epithelium were observed.
T169 875-964 Sentence denotes Multinucleated giant cells and intracytoplasmic viral inclusions were also observed [22].
T170 965-1151 Sentence denotes Another study conducted by Xu Z et al. based on the biopsy samples taken from the deceased COVID-19 patient showed diffuse alveolar damage bilaterally with cellular fibromyxoid exudates.
T171 1152-1252 Sentence denotes There was the formation of the hyaline membrane and interstitial infiltration of inflammatory cells.
T172 1253-1396 Sentence denotes Pneumocytes were atypically enlarged, having large nuclei, granular cytoplasm, and prominent nucleoli showing the viral cytopathic change [18].
T173 1397-1563 Sentence denotes Another study conducted by Zhang H et al. based on the biopsy findings of deceased COVID-19 patients showed diffuse alveolar damage and type 2 pneumocyte hyperplasia.
T174 1564-1647 Sentence denotes Fibrinous exudates were seen in the alveoli, and interstitial fibrosis was evident.
T175 1648-1719 Sentence denotes Interstitial infiltration of inflammatory cells was also observed [23].
T176 1720-1884 Sentence denotes Based on the studies reviewed, on gross examination, lungs were markedly congested, and hemorrhagic necrosis was seen, and several exudates were present in bronchi.
T177 1885-2014 Sentence denotes On the other hand, characteristic histopathological findings were severe pulmonary interstitial fibrosis, hemorrhagic infarction.
T178 2015-2121 Sentence denotes Small vessels were mainly affected, and they showed signs of congestion and were occluded by microthrombi.
T179 2122-2245 Sentence denotes Type 2 pneumocytes were the primary cells that affected their nuclei were atypically enlarged, and nucleoli were prominent.
T180 2246-2292 Sentence denotes Metaplastic change in the epithelium was seen.
T181 2293-2423 Sentence denotes Infiltration of inflammatory cells i-e lymphocytes, plasma cells, macrophages were marked, showing a severe inflammatory reaction.
T182 2424-2549 Sentence denotes Multinucleated giant cells were also seen, and some studies also suggested the presence of intracytoplasmic viral inclusions.

TEST0

Id Subject Object Predicate Lexical cue
32550056-139-145-2286782 1392-1394 ["32085846"] denotes 18
32550056-67-73-2286783 1715-1717 ["32173574"] denotes 23

2_test

Id Subject Object Predicate Lexical cue
32550056-32085846-23854238 1392-1394 32085846 denotes 18
32550056-32173574-23854239 1715-1717 32173574 denotes 23

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
487 95-102 Species denotes patient Tax:9606
488 1065-1072 Species denotes patient Tax:9606
489 1489-1497 Species denotes patients Tax:9606
490 107-111 Disease denotes died MESH:D003643
491 115-123 Disease denotes COVID-19 MESH:C000657245
492 201-221 Disease denotes hemorrhagic necrosis MESH:D006470
493 302-313 Disease denotes hemorrhagic MESH:D006470
494 381-412 Disease denotes pulmonary interstitial fibrosis MESH:D011658
495 418-438 Disease denotes hyaline degeneration MESH:D006819
496 474-493 Disease denotes hemorrhagic infarct MESH:D002544
497 559-600 Disease denotes occlusion or stenosis of the blood vessel
498 744-752 Disease denotes necrosis MESH:D009336
499 1056-1064 Disease denotes COVID-19 MESH:C000657245
500 1088-1103 Disease denotes alveolar damage MESH:D055370
501 1480-1488 Disease denotes COVID-19 MESH:C000657245
502 1513-1528 Disease denotes alveolar damage MESH:D055370
503 1551-1562 Disease denotes hyperplasia MESH:D006965
504 1626-1634 Disease denotes fibrosis MESH:D005355
505 1808-1828 Disease denotes hemorrhagic necrosis MESH:D006470
506 1981-1989 Disease denotes fibrosis MESH:D005355
507 1991-2013 Disease denotes hemorrhagic infarction MESH:D002544