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PMC:7289100 / 14295-16044 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T57 290-293 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T58 801-809 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T59 903-911 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T60 1496-1500 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T23 1496-1500 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T212 78-86 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T213 78-82 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T214 89-98 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T215 235-251 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T216 266-282 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T217 296-305 Disease denotes varicella http://purl.obolibrary.org/obo/MONDO_0005700
T218 306-312 Disease denotes zoster http://purl.obolibrary.org/obo/MONDO_0005609
T219 314-325 Disease denotes hepatitis C http://purl.obolibrary.org/obo/MONDO_0005231
T220 314-323 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T221 468-478 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T222 534-543 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T223 597-600 Disease denotes APS http://purl.obolibrary.org/obo/MONDO_0017278|http://purl.obolibrary.org/obo/MONDO_0007140
T225 1021-1031 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T226 1311-1321 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T227 1326-1354 Disease denotes systemic autoimmune diseases http://purl.obolibrary.org/obo/MONDO_0015939
T228 1359-1362 Disease denotes APS http://purl.obolibrary.org/obo/MONDO_0017278|http://purl.obolibrary.org/obo/MONDO_0007140

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T122 143-145 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T123 260-265 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T124 283-288 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T125 326-331 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T126 369-374 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T127 405-408 http://purl.obolibrary.org/obo/CLO_0001798 denotes B19
T128 708-715 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T129 792-800 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T130 821-826 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T131 831-839 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T132 846-853 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes Animals
T133 879-886 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T134 890-898 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T135 1442-1445 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4/5

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T71 597-600 Chemical denotes APS http://purl.obolibrary.org/obo/CHEBI_17709
T72 708-715 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T73 748-756 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T74 801-809 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T75 903-911 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T76 1181-1189 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T77 1261-1269 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T78 1359-1362 Chemical denotes APS http://purl.obolibrary.org/obo/CHEBI_17709
T79 1417-1425 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T114 30-33 Phenotype denotes aPL http://purl.obolibrary.org/obo/HP_0003613
T115 185-188 Phenotype denotes aPL http://purl.obolibrary.org/obo/HP_0003613
T116 266-282 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T117 314-323 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T118 428-431 Phenotype denotes aPL http://purl.obolibrary.org/obo/HP_0003613
T119 1335-1354 Phenotype denotes autoimmune diseases http://purl.obolibrary.org/obo/HP_0002960
T120 1643-1655 Phenotype denotes autoimmunity http://purl.obolibrary.org/obo/HP_0002960
T121 1690-1693 Phenotype denotes aPL http://purl.obolibrary.org/obo/HP_0003613

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T7 235-251 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T94 0-99 Sentence denotes Therefore, we can assume that aPL can be frequently detected in patients with SARS-CoV-2 infection.
T95 100-147 Sentence denotes Certainly, this finding is not surprising [52].
T96 148-414 Sentence denotes In fact, the occurrence of transient aPL was described in patients affected by several viral infections such as human immunodeficiency virus (HIV), varicella zoster, hepatitis C virus, cytomegalovirus (CMV), Epstein–Barr virus (EBV), adenovirus, parvovirus B19 [53].
T97 415-606 Sentence denotes In addition, aPL were also detected in patients with infections of different origin (bacterial, parasitic, etc) and an infection was often reported just before the clinical onset of APS [54].
T98 607-845 Sentence denotes These observations suggest the possible existence of molecular mimicry due to similarity between the peptide regions identified in the b2GPI molecule (and recognized by anti-b2GPI) and membrane proteins of several virus and bacteria [55].
T99 846-1037 Sentence denotes Animals immunized with different viruses or bacteria (or proteins derived from them) developed anti-b2GPI antibodies that in some cases were associated with the occurrence of thrombosis [56].
T100 1038-1190 Sentence denotes The different pathogenic potential of antibodies can be attributed to the fine specificity that they acquire after immunization with different antigens.
T101 1191-1482 Sentence denotes It is in fact known that antibodies directed to domain 1 of the b2GPI molecule are associated with an increased risk of thrombosis (in systemic autoimmune diseases and APS) [57] while antibodies directed to other parts of the molecule, such as domain 4/5, can be regarded as “innocent” [58].
T102 1483-1749 Sentence denotes On the other hand, the features of the host can also be important, since genetic background is recognized as one of the determinant factors in the induction of autoimmunity and can be the driver which turns aPL from being transient to persistent and pathogenic [59].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T243 78-88 SP_7 denotes SARS-CoV-2
T244 235-240 NCBITaxon:10239 denotes viral
T245 260-265 SP_6;NCBITaxon:9606 denotes human
T246 283-288 NCBITaxon:10239 denotes virus
T247 296-305 NCBITaxon:9986 denotes varicella
T248 306-312 NCBITaxon:7955 denotes zoster
T249 324-331 NCBITaxon:10376 denotes C virus
T250 333-348 NCBITaxon:10358 denotes cytomegalovirus
T251 350-353 NCBITaxon:10358 denotes CMV
T252 356-374 NCBITaxon:10376 denotes Epstein–Barr virus
T253 376-379 NCBITaxon:10376 denotes EBV
T254 382-392 NCBITaxon:10508 denotes adenovirus
T255 394-404 NCBITaxon:42413 denotes parvovirus
T256 500-509 NCBITaxon:2 denotes bacterial
T257 597-600 PR:000003015 denotes APS
T258 748-756 CHEBI:36357;CHEBI:36357 denotes molecule
T259 792-800 GO:0016020 denotes membrane
T260 821-826 NCBITaxon:10239 denotes virus
T261 831-839 NCBITaxon:2 denotes bacteria
T262 846-853 NCBITaxon:33208 denotes Animals
T263 879-886 NCBITaxon:10239 denotes viruses
T264 890-898 NCBITaxon:2 denotes bacteria
T265 952-962 GO:0042571 denotes antibodies
T266 1021-1031 GO:0007596 denotes thrombosis
T267 1076-1086 GO:0042571 denotes antibodies
T268 1181-1189 CHEBI:59132;CHEBI:59132 denotes antigens
T269 1216-1226 GO:0042571 denotes antibodies
T270 1239-1245 SO:0000417 denotes domain
T271 1261-1269 CHEBI:36357;CHEBI:36357 denotes molecule
T272 1311-1321 GO:0007596 denotes thrombosis
T273 1335-1345 UBERON:0002405 denotes autoimmune
T274 1359-1362 PR:000003015 denotes APS
T275 1375-1385 GO:0042571 denotes antibodies
T276 1417-1425 CHEBI:36357;CHEBI:36357 denotes molecule
T277 1435-1441 SO:0000417 denotes domain
T278 1556-1563 SO:0000704 denotes genetic
T68208 78-88 SP_7 denotes SARS-CoV-2
T89852 235-240 NCBITaxon:10239 denotes viral
T16941 260-265 SP_6;NCBITaxon:9606 denotes human
T36178 283-288 NCBITaxon:10239 denotes virus
T57035 296-305 NCBITaxon:9986 denotes varicella
T74327 306-312 NCBITaxon:7955 denotes zoster
T88913 324-331 NCBITaxon:10376 denotes C virus
T14726 333-348 NCBITaxon:10358 denotes cytomegalovirus
T44339 350-353 NCBITaxon:10358 denotes CMV
T92134 356-374 NCBITaxon:10376 denotes Epstein–Barr virus
T18206 376-379 NCBITaxon:10376 denotes EBV
T53996 382-392 NCBITaxon:10508 denotes adenovirus
T42323 394-404 NCBITaxon:42413 denotes parvovirus
T44233 500-509 NCBITaxon:2 denotes bacterial
T88367 597-600 PR:000003015 denotes APS
T98990 748-756 CHEBI:36357;CHEBI:36357 denotes molecule
T82478 792-800 GO:0016020 denotes membrane
T7932 821-826 NCBITaxon:10239 denotes virus
T32026 831-839 NCBITaxon:2 denotes bacteria
T50165 846-853 NCBITaxon:33208 denotes Animals
T39442 879-886 NCBITaxon:10239 denotes viruses
T93861 890-898 NCBITaxon:2 denotes bacteria
T17360 952-962 GO:0042571 denotes antibodies
T14242 1021-1031 GO:0007596 denotes thrombosis
T41910 1076-1086 GO:0042571 denotes antibodies
T77305 1181-1189 CHEBI:59132;CHEBI:59132 denotes antigens
T49028 1216-1226 GO:0042571 denotes antibodies
T32383 1239-1245 SO:0000417 denotes domain
T48984 1261-1269 CHEBI:36357;CHEBI:36357 denotes molecule
T85835 1311-1321 GO:0007596 denotes thrombosis
T28493 1335-1345 UBERON:0002405 denotes autoimmune
T90350 1359-1362 PR:000003015 denotes APS
T66679 1375-1385 GO:0042571 denotes antibodies
T94265 1417-1425 CHEBI:36357;CHEBI:36357 denotes molecule
T41847 1435-1441 SO:0000417 denotes domain
T41883 1556-1563 SO:0000704 denotes genetic

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
539 742-747 Gene denotes b2GPI Gene:350
540 781-786 Gene denotes b2GPI Gene:350
541 946-951 Gene denotes b2GPI Gene:350
542 1255-1260 Gene denotes b2GPI Gene:350
543 64-72 Species denotes patients Tax:9606
544 206-214 Species denotes patients Tax:9606
545 260-288 Species denotes human immunodeficiency virus Tax:12721
546 314-331 Species denotes hepatitis C virus Tax:11103
547 356-374 Species denotes Epstein–Barr virus Tax:10376
548 382-392 Species denotes adenovirus Tax:10508
549 394-408 Species denotes parvovirus B19 Tax:10798
550 454-462 Species denotes patients Tax:9606
551 290-293 Species denotes HIV Tax:12721
552 376-379 Species denotes EBV Tax:10376
553 30-33 Disease denotes aPL
554 78-98 Disease denotes SARS-CoV-2 infection MESH:C000657245
555 185-188 Disease denotes aPL
556 235-251 Disease denotes viral infections MESH:D001102
557 428-431 Disease denotes aPL
558 468-478 Disease denotes infections MESH:D007239
559 534-543 Disease denotes infection MESH:D007239
560 597-600 Disease denotes APS MESH:D016884
561 1021-1031 Disease denotes thrombosis MESH:D013927
562 1311-1321 Disease denotes thrombosis MESH:D013927
563 1335-1354 Disease denotes autoimmune diseases MESH:D001327
564 1359-1362 Disease denotes APS MESH:D016884
565 1690-1693 Disease denotes aPL

2_test

Id Subject Object Predicate Lexical cue
32535093-18295729-4828868 143-145 18295729 denotes 52
32535093-11836658-4828869 410-412 11836658 denotes 53
32535093-11901188-4828870 841-843 11901188 denotes 55
32535093-15041042-4828871 1033-1035 15041042 denotes 56
32535093-25645395-4828872 1365-1367 25645395 denotes 57