PMC:7283670 / 27927-28652
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T9472 | 64-69 | Body_part | denotes | Organ | http://purl.org/sig/ont/fma/fma67498 |
| T33287 | 424-430 | Body_part | denotes | Muscle | http://purl.org/sig/ont/fma/fma32558 |
| T63692 | 627-632 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T54 | 64-69 | Body_part | denotes | Organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T55 | 627-632 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T163 | 52-61 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T164 | 201-220 | Disease | denotes | respiratory disease | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T165 | 644-648 | Disease | denotes | MODS | http://purl.obolibrary.org/obo/MONDO_0043726 |
| T166 | 649-668 | Disease | denotes | Respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T286 | 64-69 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | Organ |
| T287 | 424-430 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | Muscle |
| T288 | 424-430 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | Muscle |
| T289 | 424-430 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | Muscle |
| T290 | 424-430 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | Muscle |
| T291 | 486-488 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T292 | 627-632 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T59 | 339-345 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T60 | 533-535 | Chemical | denotes | RR | http://purl.obolibrary.org/obo/CHEBI_73811 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T209 | 0-76 | Sentence | denotes | Patient Clinical findings CT (imaging findings of pneumonia) Organ damage |
| T210 | 77-103 | Sentence | denotes | Mild Negative None None |
| T211 | 104-178 | Sentence | denotes | No dyspnea, with or without cough, fever <38°C (quelled without treatment) |
| T212 | 179-220 | Sentence | denotes | No history of chronic respiratory disease |
| T213 | 221-320 | Sentence | denotes | Moderate dyspnea, with or without cough Multifocal patchy GGOs with subpleural distribution None |
| T214 | 321-356 | Sentence | denotes | SpO2 >93% without oxygen inhalation |
| T215 | 357-423 | Sentence | denotes | Severe Fever Diffuse heterogeneous consolidation with GGO, None |
| T216 | 424-491 | Sentence | denotes | Muscle ache Rapid progression (>50%) on CT imaging within 24–48 hr |
| T217 | 492-500 | Sentence | denotes | Headache |
| T218 | 501-510 | Sentence | denotes | Confusion |
| T219 | 511-532 | Sentence | denotes | Respiratory distress: |
| T220 | 533-550 | Sentence | denotes | RR ≥ 30 times/min |
| T221 | 551-569 | Sentence | denotes | SpO2 < 93% at rest |
| T222 | 570-590 | Sentence | denotes | PaO2/FiO2 ≤ 300 mmHg |
| T223 | 591-648 | Sentence | denotes | Critical Shock “Extra pulmonary” organ failure or MODS |
| T224 | 649-668 | Sentence | denotes | Respiratory failure |
| T225 | 669-695 | Sentence | denotes | need mechanical assistance |
| T226 | 696-725 | Sentence | denotes | Intensive care unit is needed |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T64 | 52-61 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T65 | 107-114 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T66 | 132-137 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T67 | 139-144 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T68 | 231-238 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T69 | 256-261 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T70 | 365-370 | Phenotype | denotes | Fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T71 | 424-435 | Phenotype | denotes | Muscle ache | http://purl.obolibrary.org/obo/HP_0003326 |
| T72 | 492-500 | Phenotype | denotes | Headache | http://purl.obolibrary.org/obo/HP_0002315 |
| T73 | 511-531 | Phenotype | denotes | Respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
| T74 | 601-606 | Phenotype | denotes | Shock | http://purl.obolibrary.org/obo/HP_0031273 |
| T75 | 649-668 | Phenotype | denotes | Respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 689 | 0-7 | Species | denotes | Patient | Tax:9606 |
| 690 | 52-61 | Disease | denotes | pneumonia | MESH:D011014 |
| 691 | 107-114 | Disease | denotes | dyspnea | MESH:D004417 |
| 692 | 132-137 | Disease | denotes | cough | MESH:D003371 |
| 693 | 139-144 | Disease | denotes | fever | MESH:D005334 |
| 694 | 201-220 | Disease | denotes | respiratory disease | MESH:D012140 |
| 695 | 231-238 | Disease | denotes | dyspnea | MESH:D004417 |
| 696 | 256-261 | Disease | denotes | cough | MESH:D003371 |
| 697 | 365-370 | Disease | denotes | Fever | MESH:D005334 |
| 698 | 424-435 | Disease | denotes | Muscle ache | MESH:D063806 |
| 699 | 492-531 | Disease | denotes | Headache Confusion Respiratory distress | MESH:D012128 |
| 700 | 627-640 | Disease | denotes | organ failure | MESH:D009102 |
| 701 | 649-668 | Disease | denotes | Respiratory failure | MESH:D012131 |