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LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T25274","span":{"begin":705,"end":708},"obj":"Body_part"}],"attributes":[{"id":"A60107","pred":"fma_id","subj":"T25274","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"3.1.2. Nigeria\nThe first evidence of the past IAV infection in Nigerian swine appeared in 2008 when H1N1 and H3N2 virus antibodies were detected in swine sampled at three different locations [54]. Shortly after that, in 2009, the first report of A(H1N1)pdm09 virus appeared in the Nigerian swine when one swine herd was found seropositive for A(H1N1)pdm09 virus. Interestingly, eight other swine herds were found seropositive for the H1N1 and four herds were found positive for human-like H3N2 viruses. The seroprevalence of IAV further increased as 66 swine herds were detected positive for A(H1N1)pdm09 virus and 53 herds were found seropositive for H1N1 virus in 2012 [52]. The active infection (viral RNA) of A(H1N1)pdm09 virus was first reported in the Nigerian swine between July 2010–June 2012 when 18 A(H1N1)pdm09 virus isolates were retrieved from the swine in Lagos. The zoonotic transmission of A(H1N1)pdm09 virus to the exposed human workers was ruled out as all the human samples were negative for the A(H1N1)pdm09 virus [55].\nNineteen more A(H1N1)pdm09 and five human-origin H3N2 viruses were identified in the Nigerian swine during 2013-2015 [56]. Later one more report of the human strain of H3N2 virus appeared in swine during January–February 2014 [57]. A high seroprevalence of IAV in a commercial piggery was reported in Lagos. Total 197 human and 281 swine sera samples were screened which determined that 87% human and 67% swine sera had antibodies for IAV depicting the past exposure [58] but the active infection was absent given that all nasal swabs were negative for IAV infection [58]. Lately, highly pathogenic avian influenza virus (HPAIV) strain H5N1 was detected in 22 swine samples between December 2015 and February 2016 during an ongoing H5N1 disease outbreak in Nigerian poultry [59] which indicated the inter-species transmission of H5N1 virus from poultry to swine [59]."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T73","span":{"begin":50,"end":59},"obj":"Disease"},{"id":"T74","span":{"begin":688,"end":697},"obj":"Disease"},{"id":"T75","span":{"begin":1527,"end":1536},"obj":"Disease"},{"id":"T76","span":{"begin":1597,"end":1606},"obj":"Disease"},{"id":"T77","span":{"begin":1639,"end":1654},"obj":"Disease"},{"id":"T78","span":{"begin":1645,"end":1654},"obj":"Disease"}],"attributes":[{"id":"A73","pred":"mondo_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A74","pred":"mondo_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A75","pred":"mondo_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A76","pred":"mondo_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A77","pred":"mondo_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/MONDO_0018695"},{"id":"A78","pred":"mondo_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"}],"text":"3.1.2. Nigeria\nThe first evidence of the past IAV infection in Nigerian swine appeared in 2008 when H1N1 and H3N2 virus antibodies were detected in swine sampled at three different locations [54]. Shortly after that, in 2009, the first report of A(H1N1)pdm09 virus appeared in the Nigerian swine when one swine herd was found seropositive for A(H1N1)pdm09 virus. Interestingly, eight other swine herds were found seropositive for the H1N1 and four herds were found positive for human-like H3N2 viruses. The seroprevalence of IAV further increased as 66 swine herds were detected positive for A(H1N1)pdm09 virus and 53 herds were found seropositive for H1N1 virus in 2012 [52]. The active infection (viral RNA) of A(H1N1)pdm09 virus was first reported in the Nigerian swine between July 2010–June 2012 when 18 A(H1N1)pdm09 virus isolates were retrieved from the swine in Lagos. The zoonotic transmission of A(H1N1)pdm09 virus to the exposed human workers was ruled out as all the human samples were negative for the A(H1N1)pdm09 virus [55].\nNineteen more A(H1N1)pdm09 and five human-origin H3N2 viruses were identified in the Nigerian swine during 2013-2015 [56]. Later one more report of the human strain of H3N2 virus appeared in swine during January–February 2014 [57]. A high seroprevalence of IAV in a commercial piggery was reported in Lagos. Total 197 human and 281 swine sera samples were screened which determined that 87% human and 67% swine sera had antibodies for IAV depicting the past exposure [58] but the active infection was absent given that all nasal swabs were negative for IAV infection [58]. Lately, highly pathogenic avian influenza virus (HPAIV) strain H5N1 was detected in 22 swine samples between December 2015 and February 2016 during an ongoing H5N1 disease outbreak in Nigerian poultry [59] which indicated the inter-species transmission of H5N1 virus from poultry to swine [59]."}

LitCovid-PD-CLO

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T97","span":{"begin":0,"end":6},"obj":"Sentence"},{"id":"T98","span":{"begin":7,"end":14},"obj":"Sentence"},{"id":"T99","span":{"begin":15,"end":196},"obj":"Sentence"},{"id":"T100","span":{"begin":197,"end":362},"obj":"Sentence"},{"id":"T101","span":{"begin":363,"end":502},"obj":"Sentence"},{"id":"T102","span":{"begin":503,"end":676},"obj":"Sentence"},{"id":"T103","span":{"begin":677,"end":876},"obj":"Sentence"},{"id":"T104","span":{"begin":877,"end":1039},"obj":"Sentence"},{"id":"T105","span":{"begin":1040,"end":1162},"obj":"Sentence"},{"id":"T106","span":{"begin":1163,"end":1271},"obj":"Sentence"},{"id":"T107","span":{"begin":1272,"end":1347},"obj":"Sentence"},{"id":"T108","span":{"begin":1348,"end":1612},"obj":"Sentence"},{"id":"T109","span":{"begin":1613,"end":1907},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"3.1.2. Nigeria\nThe first evidence of the past IAV infection in Nigerian swine appeared in 2008 when H1N1 and H3N2 virus antibodies were detected in swine sampled at three different locations [54]. Shortly after that, in 2009, the first report of A(H1N1)pdm09 virus appeared in the Nigerian swine when one swine herd was found seropositive for A(H1N1)pdm09 virus. Interestingly, eight other swine herds were found seropositive for the H1N1 and four herds were found positive for human-like H3N2 viruses. The seroprevalence of IAV further increased as 66 swine herds were detected positive for A(H1N1)pdm09 virus and 53 herds were found seropositive for H1N1 virus in 2012 [52]. The active infection (viral RNA) of A(H1N1)pdm09 virus was first reported in the Nigerian swine between July 2010–June 2012 when 18 A(H1N1)pdm09 virus isolates were retrieved from the swine in Lagos. The zoonotic transmission of A(H1N1)pdm09 virus to the exposed human workers was ruled out as all the human samples were negative for the A(H1N1)pdm09 virus [55].\nNineteen more A(H1N1)pdm09 and five human-origin H3N2 viruses were identified in the Nigerian swine during 2013-2015 [56]. Later one more report of the human strain of H3N2 virus appeared in swine during January–February 2014 [57]. A high seroprevalence of IAV in a commercial piggery was reported in Lagos. Total 197 human and 281 swine sera samples were screened which determined that 87% human and 67% swine sera had antibodies for IAV depicting the past exposure [58] but the active infection was absent given that all nasal swabs were negative for IAV infection [58]. Lately, highly pathogenic avian influenza virus (HPAIV) strain H5N1 was detected in 22 swine samples between December 2015 and February 2016 during an ongoing H5N1 disease outbreak in Nigerian poultry [59] which indicated the inter-species transmission of H5N1 virus from poultry to swine [59]."}

2_test

{"project":"2_test","denotations":[{"id":"32397138-19912605-82800795","span":{"begin":192,"end":194},"obj":"19912605"},{"id":"32397138-25631252-82800796","span":{"begin":672,"end":674},"obj":"25631252"},{"id":"32397138-24321146-82800797","span":{"begin":1035,"end":1037},"obj":"24321146"},{"id":"32397138-26094828-82800798","span":{"begin":1267,"end":1269},"obj":"26094828"},{"id":"32397138-24711881-82800799","span":{"begin":1508,"end":1510},"obj":"24711881"},{"id":"32397138-24711881-82800800","span":{"begin":1608,"end":1610},"obj":"24711881"}],"text":"3.1.2. Nigeria\nThe first evidence of the past IAV infection in Nigerian swine appeared in 2008 when H1N1 and H3N2 virus antibodies were detected in swine sampled at three different locations [54]. Shortly after that, in 2009, the first report of A(H1N1)pdm09 virus appeared in the Nigerian swine when one swine herd was found seropositive for A(H1N1)pdm09 virus. Interestingly, eight other swine herds were found seropositive for the H1N1 and four herds were found positive for human-like H3N2 viruses. The seroprevalence of IAV further increased as 66 swine herds were detected positive for A(H1N1)pdm09 virus and 53 herds were found seropositive for H1N1 virus in 2012 [52]. The active infection (viral RNA) of A(H1N1)pdm09 virus was first reported in the Nigerian swine between July 2010–June 2012 when 18 A(H1N1)pdm09 virus isolates were retrieved from the swine in Lagos. The zoonotic transmission of A(H1N1)pdm09 virus to the exposed human workers was ruled out as all the human samples were negative for the A(H1N1)pdm09 virus [55].\nNineteen more A(H1N1)pdm09 and five human-origin H3N2 viruses were identified in the Nigerian swine during 2013-2015 [56]. Later one more report of the human strain of H3N2 virus appeared in swine during January–February 2014 [57]. A high seroprevalence of IAV in a commercial piggery was reported in Lagos. Total 197 human and 281 swine sera samples were screened which determined that 87% human and 67% swine sera had antibodies for IAV depicting the past exposure [58] but the active infection was absent given that all nasal swabs were negative for IAV infection [58]. Lately, highly pathogenic avian influenza virus (HPAIV) strain H5N1 was detected in 22 swine samples between December 2015 and February 2016 during an ongoing H5N1 disease outbreak in Nigerian poultry [59] which indicated the inter-species transmission of H5N1 virus from poultry to swine [59]."}

LitCovid-PubTator