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PMC:7281378 / 12557-14464 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T25274 705-708 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T73 50-59 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T74 688-697 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T75 1527-1536 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T76 1597-1606 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 1639-1654 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T78 1645-1654 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T29982 114-119 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T85373 246-247 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T23062 259-264 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T53850 343-344 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T83140 356-361 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T77719 478-483 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T88970 494-501 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T13999 592-593 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T56857 605-610 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38909 657-662 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60529 672-674 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T33522 681-687 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T6379 713-714 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T56093 726-731 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9549 806-808 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T53973 809-810 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T71283 822-827 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8746 906-907 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15907 919-924 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24460 940-945 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T13729 979-984 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T7274 1015-1016 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38425 1028-1033 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30961 1054-1055 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33597 1076-1081 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T4399 1094-1101 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T60598 1192-1197 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19461 1213-1218 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60818 1272-1273 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38141 1304-1305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6255 1358-1363 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T27579 1431-1436 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T98187 1520-1526 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T59082 1655-1660 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T68267 1697-1699 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T22617 1874-1879 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T97 0-6 Sentence denotes 3.1.2.
T98 7-14 Sentence denotes Nigeria
T99 15-196 Sentence denotes The first evidence of the past IAV infection in Nigerian swine appeared in 2008 when H1N1 and H3N2 virus antibodies were detected in swine sampled at three different locations [54].
T100 197-362 Sentence denotes Shortly after that, in 2009, the first report of A(H1N1)pdm09 virus appeared in the Nigerian swine when one swine herd was found seropositive for A(H1N1)pdm09 virus.
T101 363-502 Sentence denotes Interestingly, eight other swine herds were found seropositive for the H1N1 and four herds were found positive for human-like H3N2 viruses.
T102 503-676 Sentence denotes The seroprevalence of IAV further increased as 66 swine herds were detected positive for A(H1N1)pdm09 virus and 53 herds were found seropositive for H1N1 virus in 2012 [52].
T103 677-876 Sentence denotes The active infection (viral RNA) of A(H1N1)pdm09 virus was first reported in the Nigerian swine between July 2010–June 2012 when 18 A(H1N1)pdm09 virus isolates were retrieved from the swine in Lagos.
T104 877-1039 Sentence denotes The zoonotic transmission of A(H1N1)pdm09 virus to the exposed human workers was ruled out as all the human samples were negative for the A(H1N1)pdm09 virus [55].
T105 1040-1162 Sentence denotes Nineteen more A(H1N1)pdm09 and five human-origin H3N2 viruses were identified in the Nigerian swine during 2013-2015 [56].
T106 1163-1271 Sentence denotes Later one more report of the human strain of H3N2 virus appeared in swine during January–February 2014 [57].
T107 1272-1347 Sentence denotes A high seroprevalence of IAV in a commercial piggery was reported in Lagos.
T108 1348-1612 Sentence denotes Total 197 human and 281 swine sera samples were screened which determined that 87% human and 67% swine sera had antibodies for IAV depicting the past exposure [58] but the active infection was absent given that all nasal swabs were negative for IAV infection [58].
T109 1613-1907 Sentence denotes Lately, highly pathogenic avian influenza virus (HPAIV) strain H5N1 was detected in 22 swine samples between December 2015 and February 2016 during an ongoing H5N1 disease outbreak in Nigerian poultry [59] which indicated the inter-species transmission of H5N1 virus from poultry to swine [59].

2_test

Id Subject Object Predicate Lexical cue
32397138-19912605-82800795 192-194 19912605 denotes 54
32397138-25631252-82800796 672-674 25631252 denotes 52
32397138-24321146-82800797 1035-1037 24321146 denotes 55
32397138-26094828-82800798 1267-1269 26094828 denotes 57
32397138-24711881-82800799 1508-1510 24711881 denotes 58
32397138-24711881-82800800 1608-1610 24711881 denotes 58

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
430 72-77 Species denotes swine Tax:9823
431 100-104 Species denotes H1N1 Tax:114727
432 148-153 Species denotes swine Tax:9823
433 248-252 Species denotes H1N1 Tax:114727
434 290-295 Species denotes swine Tax:9823
435 305-310 Species denotes swine Tax:9823
436 345-349 Species denotes H1N1 Tax:114727
437 390-395 Species denotes swine Tax:9823
438 434-438 Species denotes H1N1 Tax:114727
439 478-483 Species denotes human Tax:9606
440 489-493 Species denotes H3N2 Tax:119210
441 553-558 Species denotes swine Tax:9823
442 594-598 Species denotes H1N1 Tax:114727
443 652-656 Species denotes H1N1 Tax:114727
444 715-719 Species denotes H1N1 Tax:114727
445 767-772 Species denotes swine Tax:9823
446 811-815 Species denotes H1N1 Tax:114727
447 861-866 Species denotes swine Tax:9823
448 908-912 Species denotes H1N1 Tax:114727
449 940-945 Species denotes human Tax:9606
450 979-984 Species denotes human Tax:9606
451 1017-1021 Species denotes H1N1 Tax:114727
452 46-49 Species denotes IAV Tax:11320
453 109-113 Species denotes H3N2 Tax:119210
454 525-528 Species denotes IAV Tax:11320
455 50-59 Disease denotes infection MESH:D007239
456 688-697 Disease denotes infection MESH:D007239
457 881-889 Disease denotes zoonotic MESH:D015047
480 1056-1060 Species denotes H1N1 Tax:114727
481 1076-1081 Species denotes human Tax:9606
482 1089-1093 Species denotes H3N2 Tax:119210
483 1134-1139 Species denotes swine Tax:9823
484 1192-1197 Species denotes human Tax:9606
485 1208-1212 Species denotes H3N2 Tax:119210
486 1231-1236 Species denotes swine Tax:9823
487 1358-1363 Species denotes human Tax:9606
488 1372-1377 Species denotes swine Tax:9823
489 1431-1436 Species denotes human Tax:9606
490 1445-1450 Species denotes swine Tax:9823
491 1639-1660 Species denotes avian influenza virus Tax:11309
492 1669-1678 Species denotes strain H5 Tax:2676064
493 1700-1705 Species denotes swine Tax:9823
494 1772-1776 Species denotes H5N1 Tax:102793
495 1869-1873 Species denotes H5N1 Tax:102793
496 1896-1901 Species denotes swine Tax:9823
497 1297-1300 Species denotes IAV Tax:11320
498 1475-1478 Species denotes IAV Tax:11320
499 1593-1596 Species denotes IAV Tax:11320
500 1527-1536 Disease denotes infection MESH:D007239
501 1597-1606 Disease denotes infection MESH:D007239