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PMC:7279430 / 25116-27022 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T67 896-903 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T68 1132-1134 Body_part denotes A2 http://purl.org/sig/ont/fma/fma66595
T69 1312-1317 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T70 1349-1354 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T71 1536-1542 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T72 1543-1548 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T73 1651-1658 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T74 1728-1734 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T75 1735-1740 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T76 1870-1876 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T77 1877-1882 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T9 1536-1542 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T10 1728-1734 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T11 1870-1876 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1015 1255-1284 Gene denotes angiotensin-converting enzyme Gene:1636
1016 756-766 Species denotes Adenovirus Tax:10508
1017 772-793 Species denotes Avian influenza virus Tax:11309
1018 802-820 Species denotes Bacillus anthracis Tax:1392
1019 974-986 Species denotes Dengue virus Tax:12637
1014 1242-1247 Gene denotes hACE2 Gene:59272
1020 1006-1018 Species denotes Dengue virus Tax:12637
1021 1038-1050 Species denotes Dengue virus Tax:12637
1022 1070-1082 Species denotes Dengue virus Tax:12637
1023 1102-1117 Species denotes Russell’s viper Tax:8707
1024 1230-1241 Species denotes Echovirus 9 Tax:12060
1025 1249-1254 Species denotes Human Tax:9606
1026 1291-1296 Species denotes Human Tax:9606
1027 1325-1330 Species denotes Human Tax:9606
1028 1355-1359 Species denotes HRSV Tax:11250
1029 1361-1394 Species denotes Human respiratory syncytial virus Tax:11250
1030 1395-1400 Species denotes HSV-1 Tax:10298
1031 1402-1424 Species denotes Herpes simplex virus 1 Tax:10298
1032 1425-1430 Species denotes HSV-2 Tax:10310
1033 1432-1454 Species denotes Herpes simplex virus 2 Tax:10310
1034 1499-1510 Species denotes Junin virus Tax:11619
1035 1707-1727 Species denotes African green monkey Tax:9534
1036 1741-1751 Species denotes SARS-CoV-2 Tax:2697049
1037 1758-1805 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
1038 1849-1869 Species denotes African green monkey Tax:9534
1039 966-970 Species denotes DENV Tax:12637
1040 998-1004 Species denotes DENV-2 Tax:11060
1041 1030-1034 Species denotes DENV Tax:12637
1042 1062-1066 Species denotes DENV Tax:12637
1043 1883-1886 Species denotes YFV Tax:11089
1044 914-938 Disease denotes Coronavirus disease 2019 MESH:C000657245
1045 1306-1311 Disease denotes tumor MESH:D009369
1046 1678-1697 Disease denotes Poliomyelitis virus MESH:D011051
1047 1895-1900 Disease denotes fever MESH:D005334
1048 1222-1228 CellLine denotes ECHO 9 CVCL:1R14
1049 1285-1289 CellLine denotes HeLa CVCL:0030
1050 1318-1323 CellLine denotes HEp-2 CVCL:1906
1051 1511-1515 CellLine denotes MDCK CVCL:0422

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T140 772-787 Disease denotes Avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T141 778-787 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T142 904-912 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T143 914-938 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T144 974-980 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T145 1006-1012 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T146 1038-1044 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T147 1070-1076 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T148 1297-1311 Disease denotes cervical tumor http://purl.obolibrary.org/obo/MONDO_0021230
T149 1306-1311 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T150 1402-1416 Disease denotes Herpes simplex http://purl.obolibrary.org/obo/MONDO_0004609
T151 1432-1446 Disease denotes Herpes simplex http://purl.obolibrary.org/obo/MONDO_0004609
T152 1549-1552 Disease denotes MTT http://purl.obolibrary.org/obo/MONDO_0016757
T153 1669-1674 Disease denotes Polio http://purl.obolibrary.org/obo/MONDO_0017373
T154 1678-1691 Disease denotes Poliomyelitis http://purl.obolibrary.org/obo/MONDO_0017373
T155 1741-1749 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T156 1758-1805 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T157 1758-1791 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T158 1888-1900 Disease denotes Yellow fever http://purl.obolibrary.org/obo/MONDO_0020502

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T170 64-74 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T171 788-793 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T172 960-965 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T173 981-986 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T174 1013-1018 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T175 1045-1050 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T176 1077-1082 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T177 1132-1134 http://purl.obolibrary.org/obo/CLO_0001562 denotes A2
T178 1249-1254 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T179 1285-1289 http://purl.obolibrary.org/obo/CLO_0003684 denotes HeLa
T180 1285-1289 http://purl.obolibrary.org/obo/CLO_0050910 denotes HeLa
T181 1291-1296 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T182 1312-1317 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T183 1318-1323 http://purl.obolibrary.org/obo/CLO_0003707 denotes HEp-2
T184 1318-1323 http://purl.obolibrary.org/obo/CLO_0050927 denotes HEp-2
T185 1325-1330 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T186 1331-1341 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T187 1349-1354 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T188 1361-1366 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T189 1389-1394 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T190 1417-1422 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T191 1447-1452 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T192 1505-1510 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T193 1511-1515 http://purl.obolibrary.org/obo/CLO_0007646 denotes MDCK
T194 1511-1515 http://purl.obolibrary.org/obo/CLO_0050861 denotes MDCK
T195 1536-1542 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T196 1536-1542 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T197 1536-1542 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T198 1543-1548 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T199 1692-1697 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T200 1721-1727 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkey
T201 1728-1734 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T202 1728-1734 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T203 1728-1734 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T204 1735-1740 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T205 1843-1847 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T206 1843-1847 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T207 1863-1869 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkey
T208 1870-1876 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T209 1870-1876 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T210 1870-1876 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T211 1877-1882 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T212 1901-1906 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T400 271-277 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341
T401 821-831 Chemical denotes nicotinate http://purl.obolibrary.org/obo/CHEBI_32544
T402 832-846 Chemical denotes mononucleotide http://purl.obolibrary.org/obo/CHEBI_29075
T403 896-903 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T404 1193-1204 Chemical denotes L-aspartate http://purl.obolibrary.org/obo/CHEBI_29991|http://purl.obolibrary.org/obo/CHEBI_29993
T406 1195-1204 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T409 1255-1266 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T410 1549-1552 Chemical denotes MTT http://purl.obolibrary.org/obo/CHEBI_53233
T411 1607-1614 Chemical denotes bromide http://purl.obolibrary.org/obo/CHEBI_15858
T412 1651-1658 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 1297-1311 Phenotype denotes cervical tumor http://purl.obolibrary.org/obo/HP_0030159
T12 1895-1900 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T181 0-15 Sentence denotes Acknowledgments
T182 16-152 Sentence denotes W.N.S. participated in this work as part of the activities of the Aromatic Plant Research Center 237 (APRC, https://aromaticplant.org/).
T183 154-174 Sentence denotes Author Contributions
T184 175-613 Sentence denotes Conceptualization, J.K.R.d.S., K.G.B., and W.N.S.; methodology, J.K.R.d.S., K.G.B., and W.N.S.; formal analysis, W.N.S.; investigation, J.K.R.d.S., P.L.B.F., K.G.B., and W.N.S.; data curation, W.N.S.; writing—original draft preparation, J.K.R.d.S. and W.N.S.; writing—review and editing, J.K.R.d.S., P.L.B.F., K.G.B., and W.N.S.; project administration, W.N.S.; All authors have read and agreed to the published version of the manuscript.
T185 615-622 Sentence denotes Funding
T186 623-666 Sentence denotes This research received no external funding.
T187 668-689 Sentence denotes Conflicts of Interest
T188 690-734 Sentence denotes The authors declare no conflict of interest.
T189 735-748 Sentence denotes Abbreviations
T190 749-766 Sentence denotes Adeno Adenovirus
T191 767-793 Sentence denotes AIV Avian influenza virus
T192 794-865 Sentence denotes BaNadD Bacillus anthracis nicotinate mononucleotide adenylytransferase
T193 866-903 Sentence denotes BtOBP Bovine odorant binding protein
T194 904-938 Sentence denotes COVID-19 Coronavirus disease 2019
T195 939-965 Sentence denotes Cox B1 Coxsackie B1 virus
T196 966-997 Sentence denotes DENV-1 Dengue virus serotype 1
T197 998-1029 Sentence denotes DENV-2 Dengue virus serotype 2
T198 1030-1061 Sentence denotes DENV-3 Dengue virus serotype 3
T199 1062-1093 Sentence denotes DENV-4 Dengue virus serotype 4
T200 1094-1134 Sentence denotes DrPLA2 Russell’s viper phospholipase A2
T201 1135-1167 Sentence denotes DSnorm Normalized docking score
T202 1168-1221 Sentence denotes EcAspTA Esherichia coli L-aspartate aminotransferase
T203 1222-1241 Sentence denotes ECHO 9 Echovirus 9
T204 1242-1284 Sentence denotes hACE2 Human angiotensin-converting enzyme
T205 1285-1317 Sentence denotes HeLa Human cervical tumor cells
T206 1318-1354 Sentence denotes HEp-2 Human epithelial type 2 cells
T207 1355-1394 Sentence denotes HRSV Human respiratory syncytial virus
T208 1395-1424 Sentence denotes HSV-1 Herpes simplex virus 1
T209 1425-1454 Sentence denotes HSV-2 Herpes simplex virus 2
T210 1455-1492 Sentence denotes IC50 Median inhibitory concentration
T211 1493-1510 Sentence denotes JUNV Junin virus
T212 1511-1548 Sentence denotes MDCK Madin-Darby canine kidney cells
T213 1549-1614 Sentence denotes MTT 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide
T214 1615-1645 Sentence denotes PCR Polymerase chain reaction
T215 1646-1668 Sentence denotes PDB Protein data bank
T216 1669-1699 Sentence denotes Polio 1 Poliomyelitis virus 1
T217 1700-1740 Sentence denotes RC-37 African green monkey kidney cells
T218 1741-1805 Sentence denotes SARS-CoV-2 2019 severe acute respiratory syndrome coronavirus 2
T219 1806-1842 Sentence denotes TcAChE Torpedo acetylcholinesterase
T220 1843-1882 Sentence denotes Vero African green monkey kidney cells
T221 1883-1906 Sentence denotes YFV Yellow fever virus