PMC:7278709 / 48070-48496 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7278709","sourcedb":"PMC","sourceid":"7278709","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7278709","text":"The possible importance of tryptophan in binding in SARS-CoV-2 is exemplified in the following sequence of the SARS-CoV-2 S1-NTD section of the spike glycoprotein (including the signal peptide, in order to conserve standard numbering). The sequence is from the S1-NTD of SARS-CoV-2 GenBank entry MN908947.3, along with a brief description of accessibility in PDB entry 6VVX, which is for the spike protein in the closed state.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T347","span":{"begin":27,"end":37},"obj":"Body_part"},{"id":"T348","span":{"begin":150,"end":162},"obj":"Body_part"},{"id":"T349","span":{"begin":398,"end":405},"obj":"Body_part"}],"attributes":[{"id":"A347","pred":"fma_id","subj":"T347","obj":"http://purl.org/sig/ont/fma/fma82767"},{"id":"A348","pred":"fma_id","subj":"T348","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A349","pred":"fma_id","subj":"T349","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T347","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T348","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T349","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T124","span":{"begin":52,"end":60},"obj":"Disease"},{"id":"T125","span":{"begin":111,"end":119},"obj":"Disease"},{"id":"T126","span":{"begin":125,"end":128},"obj":"Disease"},{"id":"T128","span":{"begin":264,"end":267},"obj":"Disease"},{"id":"T130","span":{"begin":271,"end":279},"obj":"Disease"}],"attributes":[{"id":"A124","pred":"mondo_id","subj":"T124","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A125","pred":"mondo_id","subj":"T125","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A126","pred":"mondo_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A127","pred":"mondo_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A128","pred":"mondo_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A129","pred":"mondo_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A130","pred":"mondo_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T124","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T125","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T126","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T128","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T130","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T475","span":{"begin":122,"end":124},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T476","span":{"begin":178,"end":184},"obj":"http://purl.obolibrary.org/obo/SO_0000418"},{"id":"T477","span":{"begin":185,"end":192},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T478","span":{"begin":261,"end":263},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T479","span":{"begin":319,"end":320},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T475","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T476","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T477","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T478","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T479","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T705","span":{"begin":27,"end":37},"obj":"Chemical"},{"id":"T709","span":{"begin":150,"end":162},"obj":"Chemical"},{"id":"T710","span":{"begin":185,"end":192},"obj":"Chemical"},{"id":"T711","span":{"begin":398,"end":405},"obj":"Chemical"}],"attributes":[{"id":"A705","pred":"chebi_id","subj":"T705","obj":"http://purl.obolibrary.org/obo/CHEBI_16828"},{"id":"A706","pred":"chebi_id","subj":"T705","obj":"http://purl.obolibrary.org/obo/CHEBI_27897"},{"id":"A707","pred":"chebi_id","subj":"T705","obj":"http://purl.obolibrary.org/obo/CHEBI_57719"},{"id":"A708","pred":"chebi_id","subj":"T705","obj":"http://purl.obolibrary.org/obo/CHEBI_57912"},{"id":"A709","pred":"chebi_id","subj":"T709","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A710","pred":"chebi_id","subj":"T710","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A711","pred":"chebi_id","subj":"T711","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T705","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T709","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T710","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T711","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T285","span":{"begin":0,"end":235},"obj":"Sentence"},{"id":"T286","span":{"begin":236,"end":426},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T285","pred":"source","obj":"LitCovid-sentences"},{"subj":"T286","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"948","span":{"begin":392,"end":397},"obj":"Gene"},{"id":"949","span":{"begin":52,"end":62},"obj":"Species"},{"id":"950","span":{"begin":111,"end":121},"obj":"Species"},{"id":"951","span":{"begin":271,"end":281},"obj":"Species"},{"id":"952","span":{"begin":27,"end":37},"obj":"Chemical"},{"id":"953","span":{"begin":296,"end":306},"obj":"CellLine"}],"attributes":[{"id":"A948","pred":"tao:has_database_id","subj":"948","obj":"Gene:43740568"},{"id":"A949","pred":"tao:has_database_id","subj":"949","obj":"Tax:2697049"},{"id":"A950","pred":"tao:has_database_id","subj":"950","obj":"Tax:2697049"},{"id":"A951","pred":"tao:has_database_id","subj":"951","obj":"Tax:2697049"},{"id":"A952","pred":"tao:has_database_id","subj":"952","obj":"MESH:D014364"},{"id":"A953","pred":"tao:has_database_id","subj":"953","obj":"CVCL:U508"},{"subj":"948","pred":"source","obj":"LitCovid-PubTator"},{"subj":"949","pred":"source","obj":"LitCovid-PubTator"},{"subj":"950","pred":"source","obj":"LitCovid-PubTator"},{"subj":"951","pred":"source","obj":"LitCovid-PubTator"},{"subj":"952","pred":"source","obj":"LitCovid-PubTator"},{"subj":"953","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93e3ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#ecda93"},{"id":"LitCovid-PD-CLO","color":"#c093ec"},{"id":"LitCovid-PD-CHEBI","color":"#93eca6"},{"id":"LitCovid-sentences","color":"#ec9399"},{"id":"LitCovid-PubTator","color":"#93b3ec"}]}]}}