PMC:7278709 / 48070-48496
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T347 | 27-37 | Body_part | denotes | tryptophan | http://purl.org/sig/ont/fma/fma82767 |
T348 | 150-162 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
T349 | 398-405 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T124 | 52-60 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T125 | 111-119 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T126 | 125-128 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T128 | 264-267 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T130 | 271-279 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T475 | 122-124 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T476 | 178-184 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
T477 | 185-192 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T478 | 261-263 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T479 | 319-320 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T705 | 27-37 | Chemical | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_57912 |
T709 | 150-162 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
T710 | 185-192 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T711 | 398-405 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T285 | 0-235 | Sentence | denotes | The possible importance of tryptophan in binding in SARS-CoV-2 is exemplified in the following sequence of the SARS-CoV-2 S1-NTD section of the spike glycoprotein (including the signal peptide, in order to conserve standard numbering). |
T286 | 236-426 | Sentence | denotes | The sequence is from the S1-NTD of SARS-CoV-2 GenBank entry MN908947.3, along with a brief description of accessibility in PDB entry 6VVX, which is for the spike protein in the closed state. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
948 | 392-397 | Gene | denotes | spike | Gene:43740568 |
949 | 52-62 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
950 | 111-121 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
951 | 271-281 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
952 | 27-37 | Chemical | denotes | tryptophan | MESH:D014364 |
953 | 296-306 | CellLine | denotes | MN908947.3 | CVCL:U508 |