PMC:7275193 / 10998-11914
Annnotations
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T159 | 46-54 | SP_7 | denotes | COVID-19 |
T160 | 184-202 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
T161 | 204-216 | CHEBI:2955;DG_6;CHEBI:2955 | denotes | azithromycin |
T162 | 222-233 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T163 | 311-316 | NCBITaxon:10239 | denotes | viral |
T164 | 418-426 | SP_7 | denotes | COVID-19 |
T165 | 491-502 | DG_35 | denotes | tocilizumab |
T166 | 504-511 | CHEBI:35341;CHEBI:35341 | denotes | steroid |
T167 | 813-827 | GO:0030097 | denotes | hemophagocytic |
T168 | 852-863 | UBERON:0002371 | denotes | bone marrow |
T29028 | 46-54 | SP_7 | denotes | COVID-19 |
T5694 | 184-202 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
T16745 | 204-216 | CHEBI:2955;DG_6;CHEBI:2955 | denotes | azithromycin |
T78383 | 222-233 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T84544 | 311-316 | NCBITaxon:10239 | denotes | viral |
T41104 | 418-426 | SP_7 | denotes | COVID-19 |
T25638 | 491-502 | DG_35 | denotes | tocilizumab |
T50679 | 504-511 | CHEBI:35341;CHEBI:35341 | denotes | steroid |
T8877 | 813-827 | GO:0030097 | denotes | hemophagocytic |
T6676 | 852-863 | UBERON:0002371 | denotes | bone marrow |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T43 | 427-435 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
T44 | 600-608 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
T45 | 682-694 | Body_part | denotes | interleukins | http://purl.org/sig/ont/fma/fma86578 |
T46 | 852-863 | Body_part | denotes | bone marrow | http://purl.org/sig/ont/fma/fma9608 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T40 | 852-863 | Body_part | denotes | bone marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T65 | 427-441 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
T66 | 600-614 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
T67 | 864-874 | Phenotype | denotes | aspiration | http://purl.obolibrary.org/obo/HP_0002835 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T124 | 46-54 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T125 | 368-370 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T126 | 381-385 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T127 | 418-426 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T128 | 450-468 | Disease | denotes | infectious disease | http://purl.obolibrary.org/obo/MONDO_0005550 |
T129 | 813-847 | Disease | denotes | hemophagocytic lymphohistiocytosis | http://purl.obolibrary.org/obo/MONDO_0015540 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T130 | 133-134 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T131 | 250-251 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T132 | 301-302 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T133 | 341-342 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T134 | 409-410 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T135 | 798-799 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T136 | 852-856 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | bone |
T137 | 903-906 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T73 | 145-150 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
T74 | 184-202 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
T75 | 204-216 | Chemical | denotes | azithromycin | http://purl.obolibrary.org/obo/CHEBI_2955 |
T76 | 222-233 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T77 | 491-502 | Chemical | denotes | tocilizumab | http://purl.obolibrary.org/obo/CHEBI_64360 |
T78 | 504-511 | Chemical | denotes | steroid | http://purl.obolibrary.org/obo/CHEBI_35341 |
T79 | 523-532 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T80 | 682-694 | Chemical | denotes | interleukins | http://purl.obolibrary.org/obo/CHEBI_52998 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T91 | 0-151 | Sentence | denotes | While there is no evidence-based protocol for COVID-19 management, so far, we started the management based on our local protocol for a high-risk group. |
T92 | 152-334 | Sentence | denotes | We administered him, initially, hydroxychloroquine, azithromycin, and oseltamivir, since there is a study showing that these combinations might have a role in viral eradication [25]. |
T93 | 335-550 | Sentence | denotes | After a few days of improvement, he developed ARDS, which might be due to a severe COVID-19 cytokine storm, so the infectious disease team administered him tocilizumab, steroid, and other antiviral medications [26]. |
T94 | 551-615 | Sentence | denotes | This rapid improvement supports our diagnosis of cytokine storm. |
T95 | 616-742 | Sentence | denotes | However, we did not confirm the diagnosis by sending the level of interleukins because they are not available in our hospital. |
T96 | 743-916 | Sentence | denotes | Also, the patient findings were not corresponding with a diagnosis of hemophagocytic lymphohistiocytosis and bone marrow aspiration was not done as the patient has improved. |
TEST0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32547383-178-184-2084740 | 330-332 | ["32205204"] | denotes | 25 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32547383-32205204-18888172 | 330-332 | 32205204 | denotes | 25 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
345 | 753-760 | Species | denotes | patient | Tax:9606 |
346 | 895-902 | Species | denotes | patient | Tax:9606 |
347 | 184-202 | Chemical | denotes | hydroxychloroquine | MESH:D006886 |
348 | 204-216 | Chemical | denotes | azithromycin | MESH:D017963 |
349 | 222-233 | Chemical | denotes | oseltamivir | MESH:D053139 |
350 | 491-502 | Chemical | denotes | tocilizumab | MESH:C502936 |
351 | 504-511 | Chemical | denotes | steroid | MESH:D013256 |
352 | 46-54 | Disease | denotes | COVID-19 | MESH:C000657245 |
353 | 381-385 | Disease | denotes | ARDS | MESH:D012128 |
354 | 418-426 | Disease | denotes | COVID-19 | MESH:C000657245 |
355 | 450-468 | Disease | denotes | infectious disease | MESH:D003141 |
356 | 813-847 | Disease | denotes | hemophagocytic lymphohistiocytosis | MESH:D051359 |
357 | 852-874 | Disease | denotes | bone marrow aspiration | MESH:D001855 |