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PMC:7275193 / 10998-11914 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T159 46-54 SP_7 denotes COVID-19
T160 184-202 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T161 204-216 CHEBI:2955;DG_6;CHEBI:2955 denotes azithromycin
T162 222-233 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T163 311-316 NCBITaxon:10239 denotes viral
T164 418-426 SP_7 denotes COVID-19
T165 491-502 DG_35 denotes tocilizumab
T166 504-511 CHEBI:35341;CHEBI:35341 denotes steroid
T167 813-827 GO:0030097 denotes hemophagocytic
T168 852-863 UBERON:0002371 denotes bone marrow
T29028 46-54 SP_7 denotes COVID-19
T5694 184-202 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T16745 204-216 CHEBI:2955;DG_6;CHEBI:2955 denotes azithromycin
T78383 222-233 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T84544 311-316 NCBITaxon:10239 denotes viral
T41104 418-426 SP_7 denotes COVID-19
T25638 491-502 DG_35 denotes tocilizumab
T50679 504-511 CHEBI:35341;CHEBI:35341 denotes steroid
T8877 813-827 GO:0030097 denotes hemophagocytic
T6676 852-863 UBERON:0002371 denotes bone marrow

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T43 427-435 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T44 600-608 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T45 682-694 Body_part denotes interleukins http://purl.org/sig/ont/fma/fma86578
T46 852-863 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T40 852-863 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T65 427-441 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T66 600-614 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T67 864-874 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T124 46-54 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T125 368-370 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T126 381-385 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T127 418-426 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T128 450-468 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T129 813-847 Disease denotes hemophagocytic lymphohistiocytosis http://purl.obolibrary.org/obo/MONDO_0015540

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T130 133-134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 250-251 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 301-302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 341-342 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 409-410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 798-799 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 852-856 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T137 903-906 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T73 145-150 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T74 184-202 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T75 204-216 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T76 222-233 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T77 491-502 Chemical denotes tocilizumab http://purl.obolibrary.org/obo/CHEBI_64360
T78 504-511 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T79 523-532 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T80 682-694 Chemical denotes interleukins http://purl.obolibrary.org/obo/CHEBI_52998

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T91 0-151 Sentence denotes While there is no evidence-based protocol for COVID-19 management, so far, we started the management based on our local protocol for a high-risk group.
T92 152-334 Sentence denotes We administered him, initially, hydroxychloroquine, azithromycin, and oseltamivir, since there is a study showing that these combinations might have a role in viral eradication [25].
T93 335-550 Sentence denotes After a few days of improvement, he developed ARDS, which might be due to a severe COVID-19 cytokine storm, so the infectious disease team administered him tocilizumab, steroid, and other antiviral medications [26].
T94 551-615 Sentence denotes This rapid improvement supports our diagnosis of cytokine storm.
T95 616-742 Sentence denotes However, we did not confirm the diagnosis by sending the level of interleukins because they are not available in our hospital.
T96 743-916 Sentence denotes Also, the patient findings were not corresponding with a diagnosis of hemophagocytic lymphohistiocytosis and bone marrow aspiration was not done as the patient has improved.

TEST0

Id Subject Object Predicate Lexical cue
32547383-178-184-2084740 330-332 ["32205204"] denotes 25

2_test

Id Subject Object Predicate Lexical cue
32547383-32205204-18888172 330-332 32205204 denotes 25

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
345 753-760 Species denotes patient Tax:9606
346 895-902 Species denotes patient Tax:9606
347 184-202 Chemical denotes hydroxychloroquine MESH:D006886
348 204-216 Chemical denotes azithromycin MESH:D017963
349 222-233 Chemical denotes oseltamivir MESH:D053139
350 491-502 Chemical denotes tocilizumab MESH:C502936
351 504-511 Chemical denotes steroid MESH:D013256
352 46-54 Disease denotes COVID-19 MESH:C000657245
353 381-385 Disease denotes ARDS MESH:D012128
354 418-426 Disease denotes COVID-19 MESH:C000657245
355 450-468 Disease denotes infectious disease MESH:D003141
356 813-847 Disease denotes hemophagocytic lymphohistiocytosis MESH:D051359
357 852-874 Disease denotes bone marrow aspiration MESH:D001855