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LitCovid-PubTator

LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T14","span":{"begin":414,"end":419},"obj":"Body_part"},{"id":"T15","span":{"begin":420,"end":431},"obj":"Body_part"},{"id":"T16","span":{"begin":1159,"end":1165},"obj":"Body_part"},{"id":"T17","span":{"begin":1190,"end":1213},"obj":"Body_part"},{"id":"T18","span":{"begin":1311,"end":1321},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma62863"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T4","span":{"begin":414,"end":419},"obj":"Body_part"},{"id":"T5","span":{"begin":1159,"end":1165},"obj":"Body_part"},{"id":"T6","span":{"begin":1190,"end":1213},"obj":"Body_part"},{"id":"T7","span":{"begin":1196,"end":1213},"obj":"Body_part"}],"attributes":[{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T43","span":{"begin":131,"end":139},"obj":"Disease"},{"id":"T44","span":{"begin":919,"end":927},"obj":"Disease"},{"id":"T45","span":{"begin":1002,"end":1011},"obj":"Disease"},{"id":"T46","span":{"begin":1112,"end":1120},"obj":"Disease"},{"id":"T47","span":{"begin":1260,"end":1268},"obj":"Disease"},{"id":"T48","span":{"begin":1329,"end":1337},"obj":"Disease"},{"id":"T49","span":{"begin":1339,"end":1363},"obj":"Disease"},{"id":"T50","span":{"begin":1729,"end":1747},"obj":"Disease"}],"attributes":[{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-PD-CLO

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T16","span":{"begin":359,"end":361},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T17","span":{"begin":414,"end":419},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T18","span":{"begin":414,"end":419},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T19","span":{"begin":757,"end":758},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T15","span":{"begin":711,"end":732},"obj":"Phenotype"},{"id":"T16","span":{"begin":1002,"end":1011},"obj":"Phenotype"}],"attributes":[{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0007185"},{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-PD-GO-BP

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T43","span":{"begin":1408,"end":1413},"obj":"http://purl.obolibrary.org/obo/GO_0030431"},{"id":"T44","span":{"begin":1453,"end":1458},"obj":"http://purl.obolibrary.org/obo/GO_0030431"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T41","span":{"begin":0,"end":34},"obj":"Sentence"},{"id":"T42","span":{"begin":35,"end":299},"obj":"Sentence"},{"id":"T43","span":{"begin":300,"end":480},"obj":"Sentence"},{"id":"T44","span":{"begin":481,"end":756},"obj":"Sentence"},{"id":"T45","span":{"begin":757,"end":841},"obj":"Sentence"},{"id":"T46","span":{"begin":842,"end":1111},"obj":"Sentence"},{"id":"T47","span":{"begin":1112,"end":1214},"obj":"Sentence"},{"id":"T48","span":{"begin":1215,"end":1269},"obj":"Sentence"},{"id":"T49","span":{"begin":1270,"end":1296},"obj":"Sentence"},{"id":"T50","span":{"begin":1297,"end":1473},"obj":"Sentence"},{"id":"T51","span":{"begin":1474,"end":1629},"obj":"Sentence"},{"id":"T52","span":{"begin":1630,"end":1636},"obj":"Sentence"},{"id":"T53","span":{"begin":1637,"end":1748},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"2.1 Study design and participants\nFor this single-center retrospective study, 449 hospitalized patients with laboratory confirmed COVID-19 admitted to the West District of Wuhan Union Hospital between January 25 and March 15, 2020 were screened using the following inclusion and exclusion criteria. The inclusion criteria included: (1) patients aged between 18 and 80 years; and (2) absolute counts of peripheral blood lymphocytes \u003c 1.1 × 109/L within 24 h of hospital admission. The exclusion criteria included: (1) duration of hospital stay \u003c 14 days or death during hospitalization; (2) pregnant or lactating women; (3) deterioration of the condition requiring ICU care within 14 days of admission; and (4) loss of consciousness during hospitalization. A total of 153 patients met these criteria and were included in the study (Fig. 1 ). The diagnosis, clinical classification, treatment, and discharge criteria of COVID-19 were based on the “Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia (6th edition)” issued by the National Health and Family Planning Commission of China (NHPFC, 2020). COVID-19 was confirmed by real-time RT-PCR for throat-swab specimens from the upper respiratory tract. All the included patients had recovered from COVID-19.\nFig. 1 Study flow diagram. ALC, absolute lymphocyte count; COVID-19, coronavirus disease-2019; ICU, intensive care unit; PSQI, Pittsburgh Sleep Quality Index; RCSQ, Richards-Campbell sleep questionnaire.\nThe study was approved by the Ethics Committee of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (Permission number: 0173). Informed consent for this retrospective study was waived due to the rapid emergence of this infectious disease."}

PMC:7274970 / 6622-8370 JSONTXT

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PMC:7274970 / 6622-8370 JSON TXT