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PMC:7271924 / 10081-11574 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
243 324-336 Gene denotes Intelectin-1 Gene:55600
269 13-24 Gene denotes lactoferrin Gene:280846
270 108-113 Gene denotes LRP-1 Gene:4035
271 1032-1044 Gene denotes Intelectin-1 Gene:55600
1485 679-694 Chemical denotes Heparan sulfate MESH:D006497

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T92 27-31 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T93 180-187 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T94 192-196 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T95 213-223 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T96 224-239 Body_part denotes epithelial cell http://purl.org/sig/ont/fma/fma66768
T97 235-239 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T98 240-251 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T99 253-264 Body_part denotes fibroblasts http://purl.org/sig/ont/fma/fma63877
T100 266-273 Body_part denotes neurons http://purl.org/sig/ont/fma/fma54527
T101 275-286 Body_part denotes hepatocytes http://purl.org/sig/ont/fma/fma14515
T102 288-305 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T103 300-305 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T104 389-406 Body_part denotes mesothelial cells http://purl.org/sig/ont/fma/fma66773
T105 401-406 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T106 417-422 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T107 431-460 Body_part denotes goblet cells, small intestine http://purl.org/sig/ont/fma/fma86929
T108 438-443 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T109 445-460 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T110 462-467 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T111 469-474 Body_part denotes ovary http://purl.org/sig/ont/fma/fma7209
T112 480-486 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T113 512-529 Body_part denotes Endothelial cells http://purl.org/sig/ont/fma/fma66772
T114 524-529 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T115 531-540 Body_part denotes platelets http://purl.org/sig/ont/fma/fma62851
T116 542-553 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T117 570-579 Body_part denotes Platelets http://purl.org/sig/ont/fma/fma62851
T118 581-598 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T119 593-598 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T120 600-611 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T121 615-620 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T122 640-651 Body_part denotes Macrophages http://purl.org/sig/ont/fma/fma63261
T123 653-664 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T124 679-708 Body_part denotes Heparan sulfate proteoglycans http://purl.org/sig/ont/fma/fma82834
T125 679-694 Body_part denotes Heparan sulfate http://purl.org/sig/ont/fma/fma63023
T126 679-686 Body_part denotes Heparan http://purl.org/sig/ont/fma/fma67110
T127 710-715 Body_part denotes HSPGs http://purl.org/sig/ont/fma/fma82834
T128 719-735 Body_part denotes Epithelial cells http://purl.org/sig/ont/fma/fma66768
T129 730-735 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T130 737-754 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T131 749-754 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T132 756-767 Body_part denotes fibroblasts http://purl.org/sig/ont/fma/fma63877
T133 769-780 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T134 791-804 Body_part denotes Interleukin 1 http://purl.org/sig/ont/fma/fma86583
T135 791-802 Body_part denotes Interleukin http://purl.org/sig/ont/fma/fma86578
T136 814-819 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T137 1068-1074 Body_part denotes sugars http://purl.org/sig/ont/fma/fma82737
T138 1251-1270 Body_part denotes lipopolysaccharides http://purl.org/sig/ont/fma/fma82785
T139 1332-1335 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T140 1393-1422 Body_part denotes Heparan sulfate proteoglycans http://purl.org/sig/ont/fma/fma82834
T141 1393-1408 Body_part denotes Heparan sulfate http://purl.org/sig/ont/fma/fma63023
T142 1393-1400 Body_part denotes Heparan http://purl.org/sig/ont/fma/fma67110
T143 1424-1429 Body_part denotes HSPGs http://purl.org/sig/ont/fma/fma82834
T144 1459-1462 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T27 445-460 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T28 451-460 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T29 462-467 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 1001-1008 Disease denotes Amyloid http://purl.obolibrary.org/obo/MONDO_0019065
T22 1367-1376 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T23 1467-1475 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T118 27-37 http://purl.obolibrary.org/obo/CL_0000000 denotes Cell types
T119 192-202 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T120 213-223 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T121 213-223 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T122 224-234 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T123 235-239 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T124 253-264 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblasts
T125 288-305 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T126 320-322 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T127 384-387 http://purl.obolibrary.org/obo/UBERON_0001013 denotes fat
T128 389-406 http://purl.obolibrary.org/obo/CL_0000077 denotes mesothelial cells
T129 417-422 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T130 424-430 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T131 438-443 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T132 445-460 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T133 462-467 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T134 469-474 http://www.ebi.ac.uk/efo/EFO_0000973 denotes ovary
T135 480-486 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T136 497-501 http://purl.obolibrary.org/obo/CLO_0050768 denotes TLR2
T137 512-529 http://purl.obolibrary.org/obo/CL_0000115 denotes Endothelial cells
T138 581-598 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T139 613-620 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T140 679-708 http://purl.obolibrary.org/obo/PR_000001307 denotes Heparan sulfate proteoglycans
T141 710-715 http://purl.obolibrary.org/obo/PR_000001307 denotes HSPGs
T142 719-729 http://purl.obolibrary.org/obo/CL_0000066 denotes Epithelial
T143 730-735 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T144 737-754 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T145 756-767 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblasts
T146 791-804 http://purl.obolibrary.org/obo/PR_000001091 denotes Interleukin 1
T147 814-819 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T148 979-987 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes Bacteria
T149 1015-1016 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T150 1302-1304 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T151 1313-1320 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T152 1377-1382 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T153 1393-1422 http://purl.obolibrary.org/obo/PR_000001307 denotes Heparan sulfate proteoglycans
T154 1424-1429 http://purl.obolibrary.org/obo/PR_000001307 denotes HSPGs
T155 1440-1447 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T156 1489-1492 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T128 679-694 Chemical denotes Heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T129 687-694 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T130 695-708 Chemical denotes proteoglycans http://purl.obolibrary.org/obo/CHEBI_37396
T131 829-838 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T132 1009-1013 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T133 1088-1105 Chemical denotes D-galactofuranose http://purl.obolibrary.org/obo/CHEBI_143624
T134 1116-1138 Chemical denotes D-glycerol 1-phosphate http://purl.obolibrary.org/obo/CHEBI_15978
T135 1118-1138 Chemical denotes glycerol 1-phosphate http://purl.obolibrary.org/obo/CHEBI_14336|http://purl.obolibrary.org/obo/CHEBI_231935
T137 1118-1126 Chemical denotes glycerol http://purl.obolibrary.org/obo/CHEBI_17754
T138 1129-1138 Chemical denotes phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474
T142 1172-1176 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T143 1218-1222 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T144 1224-1227 Chemical denotes KDO http://purl.obolibrary.org/obo/CHEBI_32817
T145 1251-1270 Chemical denotes lipopolysaccharides http://purl.obolibrary.org/obo/CHEBI_16412
T146 1272-1276 Chemical denotes LPSs http://purl.obolibrary.org/obo/CHEBI_16412
T147 1357-1360 Chemical denotes LPS http://purl.obolibrary.org/obo/CHEBI_16412|http://purl.obolibrary.org/obo/CHEBI_52603|http://purl.obolibrary.org/obo/CHEBI_89981
T150 1393-1408 Chemical denotes Heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T151 1401-1408 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T152 1409-1422 Chemical denotes proteoglycans http://purl.obolibrary.org/obo/CHEBI_37396

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T18 563-568 http://purl.obolibrary.org/obo/GO_0038147 denotes CXCR4
T19 1306-1311 http://purl.obolibrary.org/obo/GO_0038147 denotes CXCR4

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T77 0-86 Sentence denotes Receptor for lactoferrin Cell types where receptor are present Selected references
T78 87-323 Sentence denotes Lactoferrin receptor/LRP-1/CD91/apoE receptor or the chyclomicron remnant receptor Multiple tissues and cell types including intestinal epithelial cell lymphocytes, fibroblasts, neurons, hepatocytes, endothelial cells (62) (60, 69–71)
T79 324-496 Sentence denotes Intelectin-1 (omentin-1) Visceral (omental and epicardial) fat, mesothelial cells, vascular cells, airway goblet cells, small intestine, colon, ovary, and plasma (66, 72)
T80 497-562 Sentence denotes TLR2 and TLR4 Endothelial cells, platelets, neutrophils (73–80)
T81 563-633 Sentence denotes CXCR4 Platelets, endothelial cells, neutrophils, T-cells (78, 81–83)
T82 634-678 Sentence denotes CD14 Macrophages, neutrophils (62, 84, 85)
T83 679-790 Sentence denotes Heparan sulfate proteoglycans (HSPGs), Epithelial cells, endothelial cells, fibroblasts, lymphocytes (86, 87)
T84 791-819 Sentence denotes Interleukin 1 Various cells
T85 820-904 Sentence denotes Selected molecules and entities that bind to these receptors, other than lactoferrin
T86 905-956 Sentence denotes Receptor Molecule or cellular entity References
T87 957-993 Sentence denotes Lactoferrin receptor Bacteria (30)
T88 994-1031 Sentence denotes LRP-1 Amyloid beta (Aβ) (69, 88–90)
T89 1032-1234 Sentence denotes Intelectin-1 (omentin-1) Microbial sugars, including β-D-galactofuranose (β-Galf), D-glycerol 1-phosphate, d-glycero-D-talo-oct-2-ulosonic acid (KO), and 3-deoxy-d-manno-oct-2-ulosonic acid (KDO) (91)
T90 1235-1305 Sentence denotes TLR4 Bacterial lipopolysaccharides (LPSs) Herpex simplex (78, 92–94)
T91 1306-1350 Sentence denotes CXCR4 Viruses (including HIV) (78, 95, 96)
T92 1351-1392 Sentence denotes CD14 LPS, H7N9 Influenza virus (92, 97)

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 679-694 GlycoEpitope denotes Heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T5 1393-1408 GlycoEpitope denotes Heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086

MyTest

Id Subject Object Predicate Lexical cue
32574271-22292499-34514609 308-310 22292499 denotes 62
32574271-21935933-34514610 313-315 21935933 denotes 60
32574271-28669880-34514611 317-319 28669880 denotes 69
32574271-17609417-34514611 317-319 17609417 denotes 69
32574271-18830615-34514611 317-319 18830615 denotes 69
32574271-18670097-34514612 489-491 18670097 denotes 66
32574271-28640441-34514613 493-495 28640441 denotes 72
32574271-28489816-34514614 556-558 28489816 denotes 73
32574271-29383704-34514614 556-558 29383704 denotes 73
32574271-30824879-34514614 556-558 30824879 denotes 73
32574271-31196615-34514614 556-558 31196615 denotes 73
32574271-31451099-34514614 556-558 31451099 denotes 73
32574271-32279287-34514614 556-558 32279287 denotes 73
32574271-22608210-34514614 556-558 22608210 denotes 73
32574271-26773018-34514614 556-558 26773018 denotes 73
32574271-32279287-34514615 623-625 32279287 denotes 78
32574271-19494325-34514616 627-629 19494325 denotes 81
32574271-29734477-34514616 627-629 29734477 denotes 81
32574271-30940657-34514616 627-629 30940657 denotes 81
32574271-22292499-34514617 667-669 22292499 denotes 62
32574271-27911102-34514618 671-673 27911102 denotes 84
32574271-30529429-34514619 675-677 30529429 denotes 85
32574271-21690215-34514620 783-785 21690215 denotes 86
32574271-25187545-34514621 787-789 25187545 denotes 87
32574271-20711357-34514622 990-992 20711357 denotes 30
32574271-28669880-34514623 1021-1023 28669880 denotes 69
32574271-26807022-34514624 1025-1027 26807022 denotes 88
32574271-17920016-34514624 1025-1027 17920016 denotes 88
32574271-24305823-34514624 1025-1027 24305823 denotes 88
32574271-31930911-34514625 1231-1233 31930911 denotes 91
32574271-32279287-34514626 1295-1297 32279287 denotes 78
32574271-26345428-34514627 1299-1301 26345428 denotes 92
32574271-30791839-34514627 1299-1301 30791839 denotes 92
32574271-30419930-34514627 1299-1301 30419930 denotes 92
32574271-32279287-34514628 1339-1341 32279287 denotes 78
32574271-31262533-34514629 1343-1345 31262533 denotes 95
32574271-30966844-34514630 1347-1349 30966844 denotes 96
32574271-26345428-34514631 1385-1387 26345428 denotes 92
32574271-31165725-34514632 1389-1391 31165725 denotes 97
32574271-21690215-34514633 1478-1480 21690215 denotes 86
32574271-25187545-34514634 1482-1484 25187545 denotes 87
32574271-2849510-34514635 1486-1488 2849510 denotes 98
32574271-21887302-34514635 1486-1488 21887302 denotes 98
32574271-31315999-34514635 1486-1488 31315999 denotes 98
32574271-31266258-34514635 1486-1488 31266258 denotes 98
32574271-30959796-34514635 1486-1488 30959796 denotes 98

TEST0

Id Subject Object Predicate Lexical cue
32574271-227-233-2882201 308-310 ["22292499"] denotes 62
32574271-232-238-2882202 313-315 ["21935933"] denotes 60
32574271-236-242-2882203 317-319 ["28669880", "17609417", "18830615"] denotes 69
32574271-229-235-2882204 489-491 ["18670097"] denotes 66
32574271-233-239-2882205 493-495 ["28640441"] denotes 72
32574271-234-240-2882206 556-558 ["28489816", "29383704", "30824879", "31196615", "31451099", "32279287", "22608210", "26773018"] denotes 73
32574271-227-233-2882207 623-625 ["32279287"] denotes 78
32574271-231-237-2882208 627-629 ["19494325", "29734477", "30940657"] denotes 81
32574271-233-239-2882209 667-669 ["22292499"] denotes 62
32574271-237-243-2882210 671-673 ["27911102"] denotes 84
32574271-234-240-2882211 675-677 ["30529429"] denotes 85
32574271-235-241-2882212 783-785 ["21690215"] denotes 86
32574271-228-234-2882213 787-789 ["25187545"] denotes 87
32574271-235-241-2882214 990-992 ["20711357"] denotes 30
32574271-229-235-2882215 1021-1023 ["28669880"] denotes 69
32574271-233-239-2882216 1025-1027 ["26807022", "17920016", "24305823"] denotes 88
32574271-215-221-2882217 1231-1233 ["31930911"] denotes 91
32574271-220-226-2882218 1295-1297 ["32279287"] denotes 78
32574271-224-230-2882219 1299-1301 ["26345428", "30791839", "30419930"] denotes 92
32574271-221-227-2882220 1339-1341 ["32279287"] denotes 78
32574271-225-231-2882221 1343-1345 ["31262533"] denotes 95
32574271-229-235-2882222 1347-1349 ["30966844"] denotes 96
32574271-228-234-2882223 1385-1387 ["26345428"] denotes 92
32574271-232-238-2882224 1389-1391 ["31165725"] denotes 97
32574271-233-239-2882225 1478-1480 ["21690215"] denotes 86
32574271-237-243-2882226 1482-1484 ["25187545"] denotes 87
32574271-218-224-2882227 1486-1488 ["2849510", "21887302", "31315999", "31266258", "30959796"] denotes 98

2_test

Id Subject Object Predicate Lexical cue
32574271-22292499-34514609 308-310 22292499 denotes 62
32574271-21935933-34514610 313-315 21935933 denotes 60
32574271-28669880-34514611 317-319 28669880 denotes 69
32574271-17609417-34514611 317-319 17609417 denotes 69
32574271-18830615-34514611 317-319 18830615 denotes 69
32574271-18670097-34514612 489-491 18670097 denotes 66
32574271-28640441-34514613 493-495 28640441 denotes 72
32574271-28489816-34514614 556-558 28489816 denotes 73
32574271-29383704-34514614 556-558 29383704 denotes 73
32574271-30824879-34514614 556-558 30824879 denotes 73
32574271-31196615-34514614 556-558 31196615 denotes 73
32574271-31451099-34514614 556-558 31451099 denotes 73
32574271-32279287-34514614 556-558 32279287 denotes 73
32574271-22608210-34514614 556-558 22608210 denotes 73
32574271-26773018-34514614 556-558 26773018 denotes 73
32574271-32279287-34514615 623-625 32279287 denotes 78
32574271-19494325-34514616 627-629 19494325 denotes 81
32574271-29734477-34514616 627-629 29734477 denotes 81
32574271-30940657-34514616 627-629 30940657 denotes 81
32574271-22292499-34514617 667-669 22292499 denotes 62
32574271-27911102-34514618 671-673 27911102 denotes 84
32574271-30529429-34514619 675-677 30529429 denotes 85
32574271-21690215-34514620 783-785 21690215 denotes 86
32574271-25187545-34514621 787-789 25187545 denotes 87
32574271-20711357-34514622 990-992 20711357 denotes 30
32574271-28669880-34514623 1021-1023 28669880 denotes 69
32574271-26807022-34514624 1025-1027 26807022 denotes 88
32574271-17920016-34514624 1025-1027 17920016 denotes 88
32574271-24305823-34514624 1025-1027 24305823 denotes 88
32574271-31930911-34514625 1231-1233 31930911 denotes 91
32574271-32279287-34514626 1295-1297 32279287 denotes 78
32574271-26345428-34514627 1299-1301 26345428 denotes 92
32574271-30791839-34514627 1299-1301 30791839 denotes 92
32574271-30419930-34514627 1299-1301 30419930 denotes 92
32574271-32279287-34514628 1339-1341 32279287 denotes 78
32574271-31262533-34514629 1343-1345 31262533 denotes 95
32574271-30966844-34514630 1347-1349 30966844 denotes 96
32574271-26345428-34514631 1385-1387 26345428 denotes 92
32574271-31165725-34514632 1389-1391 31165725 denotes 97
32574271-21690215-34514633 1478-1480 21690215 denotes 86
32574271-25187545-34514634 1482-1484 25187545 denotes 87
32574271-2849510-34514635 1486-1488 2849510 denotes 98
32574271-21887302-34514635 1486-1488 21887302 denotes 98
32574271-31315999-34514635 1486-1488 31315999 denotes 98
32574271-31266258-34514635 1486-1488 31266258 denotes 98
32574271-30959796-34514635 1486-1488 30959796 denotes 98