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PMC:7269710 / 21152-27677 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
332 66-74 Disease denotes COVID-19 MESH:C000657245
333 205-213 Disease denotes COVID-19 MESH:C000657245
336 524-529 Species denotes human Tax:9606
337 533-538 Species denotes human Tax:9606
348 1741-1747 Species denotes people Tax:9606
349 1916-1922 Species denotes people Tax:9606
350 2210-2218 Species denotes patients Tax:9606
351 2334-2342 Species denotes patients Tax:9606
352 2793-2803 Species denotes SARS-CoV-2 Tax:2697049
353 3037-3047 Species denotes SARS-CoV-2 Tax:2697049
354 1890-1899 Disease denotes pneumonia MESH:D011014
355 2172-2181 Disease denotes pneumonia MESH:D011014
356 2779-2787 Disease denotes infected MESH:D007239
357 2964-2972 Disease denotes COVID-19 MESH:C000657245
360 3686-3689 Gene denotes aid Gene:57379
361 3484-3496 Species denotes participants Tax:9606
364 4059-4071 Species denotes participants Tax:9606
365 3743-3751 Disease denotes COVID-19 MESH:C000657245
375 4611-4614 Gene denotes AC2 Gene:108
376 4873-4876 Gene denotes AC2 Gene:108
377 5085-5088 Gene denotes AC2 Gene:108
378 5097-5100 Gene denotes AC2 Gene:108
379 4776-4779 Gene denotes AC2 Gene:108
380 5005-5011 Species denotes people Tax:9606
381 4886-4895 Disease denotes infection MESH:D007239
382 4948-4958 Disease denotes infections MESH:D007239
383 5110-5119 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 4410-4414 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T9 4410-4414 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T98 66-74 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 205-213 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 1890-1899 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T101 2172-2181 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T102 2793-2801 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T103 2964-2972 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T104 3037-3045 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T105 3743-3751 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 4886-4895 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T107 4948-4958 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T108 5110-5119 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T170 117-118 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 163-164 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T172 263-264 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T173 524-529 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T174 533-538 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T175 578-580 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T176 647-648 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 737-739 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T178 1124-1125 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T179 1153-1154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 1389-1391 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T181 1632-1633 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 1753-1754 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 1999-2000 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T184 2084-2091 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T185 2142-2145 http://purl.obolibrary.org/obo/CLO_0050884 denotes ten
T186 2199-2206 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T187 2329-2333 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T188 2530-2535 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T189 2886-2891 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T190 3048-3053 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T191 3108-3109 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 3285-3286 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T193 3693-3699 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T194 3949-3950 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T195 4007-4017 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T196 4105-4106 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T197 4323-4324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T198 4426-4427 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 4574-4575 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T200 4611-4614 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T201 4776-4779 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T202 4873-4876 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T203 5085-5088 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T204 5097-5100 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T205 5139-5140 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T206 5192-5197 http://purl.obolibrary.org/obo/CLO_0002215 denotes C, C1
T207 5239-5241 http://purl.obolibrary.org/obo/CLO_0002105 denotes C2
T208 5239-5241 http://purl.obolibrary.org/obo/CLO_0051742 denotes C2
T209 6283-6290 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T210 6440-6446 http://purl.obolibrary.org/obo/CLO_0001658 denotes active

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T29 132-137 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T30 1096-1101 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T31 5239-5241 Chemical denotes C2 http://purl.obolibrary.org/obo/CHEBI_30083

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T203 0-10 Sentence denotes Discussion
T204 11-88 Sentence denotes We report three clusters showing local transmission of COVID-19 in Singapore.
T205 89-262 Sentence denotes The three clusters involved a Chinese tour group, company conference, and a church and show the transmissibility of COVID-19 in community settings beyond household clusters.
T206 263-499 Sentence denotes A household cluster was previously reported in Shenzhen, Guangdong, China.12 These findings have implications for public-health measures and outbreak investigations that other countries might consider to detect and contain transmission.
T207 500-632 Sentence denotes The first indication of human-to-human transmission in Singapore was detected 11 days after confirmation of the first imported case.
T208 633-746 Sentence denotes China imposed a lockdown of Wuhan on Jan 23, 2020, and suspended all outgoing tour groups beginning Jan 27, 2020.
T209 747-926 Sentence denotes Despite these measures, local clusters were subsequently identified in Singapore, with probable links to travellers from China before the measures to curb travel were implemented.
T210 927-1086 Sentence denotes Although the primary case or cases in all three clusters cannot be conclusively identified, they are postulated to be tourists or business visitors from China.
T211 1087-1398 Sentence denotes The tour group implicated in cluster A originated from Guangxi at a time when relatively few cases had been reported in that region of China.13 Temperature screening for inbound travellers on flights from Wuhan was implemented in Singapore on Jan 3, 2020, and expanded to all flights from China on Jan 22, 2020.
T212 1399-1564 Sentence denotes Nonetheless, it is unlikely that these primary cases could be identified by temperature screening, because there was no indication that they were febrile on arrival.
T213 1565-1827 Sentence denotes Therefore, it is important that countries, particularly those with a high travel volume from China, enhance their surveillance system to identify local cases, not merely among people with a travel history to China because cases could be present in the community.
T214 1828-2092 Sentence denotes The local cases in cluster C were identified through enhanced pneumonia surveillance of people who had no history of travel to China, whereas the initial cases in cluster A were identified because of heightened suspicion by health-care workers, leading to testing.
T215 2093-2415 Sentence denotes Among the first 84 confirmed cases in Singapore, ten were detected by enhanced pneumonia surveillance and testing of patients in intensive care units, and another eight affected individuals were detected based on doctors' discretion to test patients whom they viewed with suspicion for clinical or epidemiological reasons.
T216 2416-2629 Sentence denotes Such surveillance systems are, therefore, important to identify cases in the community who would be missed if the focus were only on travellers, and they have enabled prompt investigation and containment measures.
T217 2630-2892 Sentence denotes Furthermore, with swift response in contact tracing and quarantine of close contacts, two close contacts developed symptoms and were confirmed to be infected with SARS-CoV-2 during their period of quarantine, ensuring no further onward transmission of the virus.
T218 2893-3214 Sentence denotes Only two of 425 close contacts identified by contact tracing developed COVID-19 (ie, most cases identified in the clusters did not transmit the SARS-CoV-2 virus to their close contacts), raising the hypothesis that a few spreading events can result in clusters of transmission, whereas for most cases, transmission ended.
T219 3215-3276 Sentence denotes The ease of international travel makes containment difficult.
T220 3277-3530 Sentence denotes Cluster B was identified because of sharing of case data in Malaysia through the IHR focal point, and Singapore shared information on attendees at the company conference to respective IHR focal points where participants at the conference had originated.
T221 3531-3729 Sentence denotes This work led to early identification of cases globally and highlights the importance of international cooperation and sharing of information under IHR to aid in active case-finding and containment.
T222 3730-3837 Sentence denotes The cases of COVID-19 in these three clusters are probably attributable to close or prolonged interactions.
T223 3838-3952 Sentence denotes Direct physical contact was reported between shop assistants and tourists at the health products shop (cluster A).
T224 3953-4230 Sentence denotes Handshaking and physical contact during team-building activities and sharing of meals were reported among participants of the business meeting (cluster B).14 Therefore, direct transmission could be possible by contact or indirect transmission (eg, via fomites and shared food).
T225 4231-4482 Sentence denotes We have shown environmental contamination of common-touch surfaces in the isolation room of a confirmed case.15 This finding highlights the importance of emphasising personal and hand hygiene as a key public-health message that countries should adopt.
T226 4483-4562 Sentence denotes Recall bias could affect the accuracy of symptom-onset dates reported by cases.
T227 4563-4744 Sentence denotes In cluster A, the date of onset of symptoms for AC2 was uncertain because the individual only sought primary-care treatment on Jan 30, 2020, 7 days after reported onset of symptoms.
T228 4745-4775 Sentence denotes Other exposures are plausible.
T229 4776-5041 Sentence denotes AC2 reported having symptoms on the day of the tour group's arrival, and we could postulate that AC2 acquired infection from other tourists before Jan 23, 2020, and seeded infections among colleagues, the tour guide, and the two people from Guangxi on Jan 23, 2020.
T230 5042-5169 Sentence denotes However, case AJ1 had no interactions with AC2, unless AC2 acquired infection serendipitously at a similar time, independently.
T231 5170-5396 Sentence denotes Similarly, in cluster C, C1 did not report symptoms until 5 days and C2 until 3 days, after attending church, and this difference could be attributable to recall bias of symptom-onset dates, particularly if symptoms were mild.
T232 5397-5553 Sentence denotes Other study limitations include the small sample size used to ascertain the incubation period, because primary cases could not be identified with certainty.
T233 5554-5703 Sentence denotes Moreover, symptom-onset dates and the movement of and exposure history of cases detected overseas were either based on media reports or were unknown.
T234 5704-6045 Sentence denotes Based on symptom-onset dates of 17 local cases, the median incubation period (4 days) corroborates other published findings.16, 17 Although there is interest on asymptomatic transmission, we are unable to address this point in our study, and further studies should be done to better understand disease transmissibility of asymptomatic cases.
T235 6046-6403 Sentence denotes In conclusion, as importation and local transmission could have occurred in other countries before the lockdown of Wuhan and institution of travel restrictions by China, local clusters outside China can be expected and efforts should be focused on surveillance for locally acquired cases and containment efforts to prevent widespread community transmission.
T236 6404-6525 Sentence denotes It is important for countries to do active case-finding among close contacts of cases to prevent clusters from spreading.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T26 1890-1899 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T27 2172-2181 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32192580-31986261-66270739 337-339 31986261 denotes 12