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PMC:7269710 / 11220-14321 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
195 124-127 Gene denotes AC1 Gene:10141
196 417-421 Gene denotes AGX1 Gene:6675
197 426-430 Gene denotes AGX2 Gene:6675
198 672-676 Gene denotes AGX1 Gene:6675
199 681-685 Gene denotes AGX2 Gene:6675
200 1076-1080 Gene denotes AGX1 Gene:6675
201 1085-1089 Gene denotes AGX2 Gene:6675
202 132-135 Gene denotes AC2 Gene:108
203 322-328 Species denotes people Tax:9606
204 888-900 Species denotes participants Tax:9606
205 1034-1044 Species denotes SARS-CoV-2 Tax:2697049
206 99-107 Disease denotes COVID-19 MESH:C000657245
207 212-220 Disease denotes COVID-19 MESH:C000657245
215 1267-1271 Gene denotes AGX1 Gene:6675
216 1276-1280 Gene denotes AGX2 Gene:6675
217 1333-1343 Species denotes SARS-CoV-2 Tax:2697049
218 1418-1430 Species denotes participants Tax:9606
219 1206-1214 Disease denotes coughing MESH:D003371
220 1306-1314 Disease denotes COVID-19 MESH:C000657245
221 1380-1400 Disease denotes respiratory symptoms MESH:D012818
233 1884-1887 Gene denotes AC2 Gene:108
234 1889-1892 Gene denotes AC3 Gene:109
235 1898-1901 Gene denotes AC4 Gene:196883
236 2069-2072 Gene denotes AC1 Gene:10141
237 2074-2077 Gene denotes AC2 Gene:108
238 2079-2082 Gene denotes AC3 Gene:109
239 2088-2091 Gene denotes AC4 Gene:196883
240 2312-2315 Gene denotes AC1 Gene:10141
241 2322-2325 Gene denotes AH2 Gene:84083
242 1879-1882 Gene denotes AC1 Gene:10141
243 1973-1981 Disease denotes COVID-19 MESH:C000657245
249 2562-2565 Gene denotes AC4 Gene:196883
250 2829-2832 Gene denotes AC1 Gene:10141
251 2554-2557 Gene denotes AC3 Gene:109
252 2626-2636 Species denotes SARS-CoV-2 Tax:2697049
253 2900-2910 Species denotes SARS-CoV-2 Tax:2697049
255 2972-2975 Gene denotes AH2 Gene:84083

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 2783-2787 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T12 3084-3092 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 99-107 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 212-220 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 1000-1003 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840
T74 1034-1042 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 1196-1199 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840
T76 1306-1314 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 1333-1341 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 1973-1981 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 2626-2634 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 2900-2908 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 2986-2989 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T73 8-9 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T74 124-127 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T75 132-135 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T76 230-236 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T77 433-434 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 579-581 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T79 634-636 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T80 658-659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 787-789 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T82 1014-1020 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T83 1562-1563 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 1603-1604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 1879-1882 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T86 1884-1887 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T87 2069-2072 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T88 2074-2077 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T89 2312-2315 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T90 2606-2612 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T91 2693-2699 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T92 2829-2832 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T93 2866-2872 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 665-670 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T11 1147-1152 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 1412-1417 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T13 1463-1468 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T14 1538-1543 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T15 2041-2046 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T16 2322-2325 Chemical denotes AH2 http://purl.obolibrary.org/obo/CHEBI_17499
T17 2972-2975 Chemical denotes AH2 http://purl.obolibrary.org/obo/CHEBI_17499

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 762-768 http://purl.obolibrary.org/obo/GO_0060361 denotes flight

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T128 0-9 Sentence denotes Cluster A
T129 10-160 Sentence denotes The Ministry of Health in Singapore was alerted to two individuals with locally acquired COVID-19 on Feb 3, 2020 (AC1 and AC2; figure 1 upper panels).
T130 161-311 Sentence denotes They did not fit the case-definition for suspected COVID-19 but were tested because they reported frequent occupational contact with Chinese tourists.
T131 312-671 Sentence denotes These two people were later identified to be linked epidemiologically to two other affected individuals (AGX1 and AGX2), a father and daughter reported by official and media websites in Guangxi, China,8, 9, 10 to be Chinese tourists who travelled to Singapore on Jan 22, 2020, and who visited several tourist sites on Jan 22–23, 2020, as part of a tour group.
T132 672-867 Sentence denotes AGX1 and AGX2 subsequently departed for Malaysia before re-entry into Singapore for their flight to Guangxi on Jan 27, 2020, and they developed symptoms on Jan 28, 2020, after arrival in Guangxi.
T133 868-1119 Sentence denotes Details of the tour participants and the itinerary, obtained through the Singapore-based tour guide for the Singapore tour segment (AT1, who also tested positive for SARS-CoV-2) corroborated with details for AGX1 and AGX2 reported by Guangxi websites.
T134 1120-1231 Sentence denotes Of 20 tourists in the tour group from Guangxi, five or six were reported by AT1 to be coughing during the tour.
T135 1232-1500 Sentence denotes To the best of our knowledge, only AGX1 and AGX2 had laboratory-confirmed COVID-19 (positive PCR for SARS-CoV-2).8 However, in view of the reported respiratory symptoms among tour group participants, it is possible that other tour group members were the primary cases.
T136 1501-1681 Sentence denotes Among the places visited by the tour group in Singapore were a complementary health products shop and a jewellery shop; both shops are patronised frequently by Chinese tour groups.
T137 1682-1819 Sentence denotes The visits to the complementary health products shop lasted approximately 30 min, and the visit to the jewellery shop lasted roughly 1 h.
T138 1820-1982 Sentence denotes Four assistants in the complementary health products shop (AC1, AC2, AC3, and AC4) and one assistant in the jewellery shop (AJ1) were identified to have COVID-19.
T139 1983-2068 Sentence denotes All five shop assistants were at work on the day the tour group from Guangxi visited.
T140 2069-2240 Sentence denotes AC1, AC2, AC3, and AC4 reported that they would assist customers to apply samples of medicinal oil on their bodies, and handwashing was not usually done between customers.
T141 2241-2379 Sentence denotes Three secondary transmission cases were identified in the household of AC1 (AH1, AH2, and AH3), none of whom were contacts of other cases.
T142 2380-2637 Sentence denotes For the cases who were confirmed on or before Feb 5, 2020, 179 close contacts who were in Singapore and contactable were placed under quarantine, of whom two close contacts (AC3 and AC4) subsequently reported to be unwell and tested positive for SARS-CoV-2.
T143 2638-2688 Sentence denotes An additional six close contacts were quarantined.
T144 2689-2911 Sentence denotes For active surveillance, 16 shop assistants at the complementary health products shop and the sole remaining uninfected household member of AC1, who were all asymptomatic, were tested and none were positive for SARS-CoV-2.
T145 2912-3101 Sentence denotes Viral genomic sequences were available for four cases (AH1, AH2, AH3, and AT1) and phylogenetic analysis confirmed their linkage, as suggested by the epidemiological data (appendix pp 2–3).

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 124-127 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T2 1879-1882 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T3 2069-2072 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T4 2312-2315 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T5 2829-2832 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 1206-1214 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735