PMC:7267243 / 10325-10880 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"307","span":{"begin":129,"end":133},"obj":"Species"},{"id":"308","span":{"begin":135,"end":145},"obj":"Species"},{"id":"309","span":{"begin":150,"end":171},"obj":"Species"},{"id":"310","span":{"begin":377,"end":384},"obj":"Species"},{"id":"311","span":{"begin":196,"end":209},"obj":"Chemical"},{"id":"312","span":{"begin":260,"end":273},"obj":"Chemical"},{"id":"313","span":{"begin":519,"end":532},"obj":"Chemical"},{"id":"314","span":{"begin":53,"end":57},"obj":"Disease"},{"id":"315","span":{"begin":407,"end":426},"obj":"Disease"}],"attributes":[{"id":"A307","pred":"tao:has_database_id","subj":"307","obj":"Tax:162145"},{"id":"A308","pred":"tao:has_database_id","subj":"308","obj":"Tax:2697049"},{"id":"A309","pred":"tao:has_database_id","subj":"309","obj":"Tax:746128"},{"id":"A310","pred":"tao:has_database_id","subj":"310","obj":"Tax:9606"},{"id":"A311","pred":"tao:has_database_id","subj":"311","obj":"MESH:C012990"},{"id":"A312","pred":"tao:has_database_id","subj":"312","obj":"MESH:C012990"},{"id":"A313","pred":"tao:has_database_id","subj":"313","obj":"MESH:C508735"},{"id":"A314","pred":"tao:has_database_id","subj":"314","obj":"MESH:D012128"},{"id":"A315","pred":"tao:has_database_id","subj":"315","obj":"MESH:D058186"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T16","span":{"begin":190,"end":195},"obj":"Body_part"},{"id":"T17","span":{"begin":275,"end":280},"obj":"Body_part"},{"id":"T18","span":{"begin":492,"end":497},"obj":"Body_part"}],"attributes":[{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma7197"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T11","span":{"begin":190,"end":195},"obj":"Body_part"},{"id":"T12","span":{"begin":275,"end":280},"obj":"Body_part"},{"id":"T13","span":{"begin":492,"end":497},"obj":"Body_part"}],"attributes":[{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A13","pred":"uberon_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/UBERON_0002107"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T107","span":{"begin":53,"end":57},"obj":"Disease"},{"id":"T108","span":{"begin":135,"end":139},"obj":"Disease"},{"id":"T109","span":{"begin":407,"end":426},"obj":"Disease"},{"id":"T110","span":{"begin":413,"end":426},"obj":"Disease"}],"attributes":[{"id":"A107","pred":"mondo_id","subj":"T107","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A108","pred":"mondo_id","subj":"T108","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0002492"},{"id":"A110","pred":"mondo_id","subj":"T110","obj":"http://purl.obolibrary.org/obo/MONDO_0001106"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T72","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T73","span":{"begin":63,"end":64},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T74","span":{"begin":109,"end":115},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T75","span":{"begin":240,"end":246},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T76","span":{"begin":275,"end":280},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T77","span":{"begin":373,"end":375},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T78","span":{"begin":373,"end":375},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T79","span":{"begin":492,"end":497},"obj":"http://purl.obolibrary.org/obo/UBERON_0002107"},{"id":"T80","span":{"begin":492,"end":497},"obj":"http://www.ebi.ac.uk/efo/EFO_0000887"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T83","span":{"begin":89,"end":91},"obj":"Chemical"},{"id":"T85","span":{"begin":196,"end":209},"obj":"Chemical"},{"id":"T86","span":{"begin":260,"end":273},"obj":"Chemical"},{"id":"T87","span":{"begin":373,"end":375},"obj":"Chemical"},{"id":"T88","span":{"begin":519,"end":532},"obj":"Chemical"}],"attributes":[{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_16170"},{"id":"A84","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_25195"},{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A88","pred":"chebi_id","subj":"T88","obj":"http://purl.obolibrary.org/obo/CHEBI_85979"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T4","span":{"begin":196,"end":209},"obj":"GlycoEpitope"},{"id":"T5","span":{"begin":260,"end":273},"obj":"GlycoEpitope"}],"attributes":[{"id":"A4","pred":"glyco_epitope_db_id","subj":"T4","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A5","pred":"glyco_epitope_db_id","subj":"T5","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-sentences","denotations":[{"id":"T124","span":{"begin":93,"end":172},"obj":"Sentence"},{"id":"T125","span":{"begin":173,"end":230},"obj":"Sentence"},{"id":"T126","span":{"begin":231,"end":274},"obj":"Sentence"},{"id":"T127","span":{"begin":275,"end":399},"obj":"Sentence"},{"id":"T128","span":{"begin":400,"end":555},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T43","span":{"begin":407,"end":426},"obj":"Phenotype"},{"id":"T44","span":{"begin":483,"end":505},"obj":"Phenotype"}],"attributes":[{"id":"A43","pred":"hp_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/HP_0001919"},{"id":"A44","pred":"hp_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/HP_0002910"}],"text":"A 70‐year‐old man was admitted to the ICU because of ARDS with a Horowitz‐Index of 93 mm Hg. PCR on BALF was tested positive for hMPV, SARS‐CoV‐2 and Aspergillus fumigatus. Two days before, serum galactomannan had turned positive. BALF was tested positive for galactomannan. Chest CT showed ground‐glass opacities with some small nodular infiltrations of up to 1 cm (Video S2, patient #2 Figure 1B). Due to acute renal failure requiring slow low‐efficient daily dialysis (SLEDD) and elevated liver enzymes, intravenous isavuconazole treatment was started."}