PMC:7265874 / 3250-4194 JSONTXT

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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T10","span":{"begin":747,"end":750},"obj":"Body_part"}],"attributes":[{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T35","span":{"begin":244,"end":251},"obj":"Disease"},{"id":"T36","span":{"begin":369,"end":371},"obj":"Disease"},{"id":"T38","span":{"begin":471,"end":473},"obj":"Disease"},{"id":"T40","span":{"begin":475,"end":482},"obj":"Disease"},{"id":"T41","span":{"begin":606,"end":608},"obj":"Disease"},{"id":"T43","span":{"begin":610,"end":613},"obj":"Disease"},{"id":"T44","span":{"begin":620,"end":639},"obj":"Disease"},{"id":"T45","span":{"begin":620,"end":629},"obj":"Disease"},{"id":"T46","span":{"begin":857,"end":860},"obj":"Disease"}],"attributes":[{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0011122"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005015"},{"id":"A37","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0016367"},{"id":"A38","pred":"mondo_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/MONDO_0005015"},{"id":"A39","pred":"mondo_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/MONDO_0016367"},{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0011122"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0005015"},{"id":"A42","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0016367"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0005300"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0019324"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0006594"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0018874"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T25","span":{"begin":158,"end":162},"obj":"http://purl.obolibrary.org/obo/CLO_0007489"},{"id":"T26","span":{"begin":173,"end":174},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T27","span":{"begin":209,"end":210},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T28","span":{"begin":263,"end":264},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T29","span":{"begin":372,"end":373},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T30","span":{"begin":499,"end":500},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T31","span":{"begin":640,"end":641},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T32","span":{"begin":847,"end":849},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T33","span":{"begin":873,"end":874},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T34","span":{"begin":912,"end":913},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T36","span":{"begin":8,"end":10},"obj":"Chemical"},{"id":"T37","span":{"begin":98,"end":101},"obj":"Chemical"},{"id":"T39","span":{"begin":184,"end":187},"obj":"Chemical"},{"id":"T42","span":{"begin":277,"end":280},"obj":"Chemical"},{"id":"T43","span":{"begin":323,"end":336},"obj":"Chemical"},{"id":"T44","span":{"begin":346,"end":348},"obj":"Chemical"},{"id":"T45","span":{"begin":369,"end":371},"obj":"Chemical"},{"id":"T46","span":{"begin":386,"end":389},"obj":"Chemical"},{"id":"T47","span":{"begin":471,"end":473},"obj":"Chemical"},{"id":"T48","span":{"begin":513,"end":516},"obj":"Chemical"},{"id":"T49","span":{"begin":583,"end":585},"obj":"Chemical"},{"id":"T50","span":{"begin":606,"end":608},"obj":"Chemical"},{"id":"T51","span":{"begin":654,"end":657},"obj":"Chemical"},{"id":"T52","span":{"begin":724,"end":726},"obj":"Chemical"},{"id":"T53","span":{"begin":819,"end":832},"obj":"Chemical"},{"id":"T54","span":{"begin":862,"end":865},"obj":"Chemical"},{"id":"T56","span":{"begin":887,"end":890},"obj":"Chemical"}],"attributes":[{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A38","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A39","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_16000"},{"id":"A40","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_53460"},{"id":"A41","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_71488"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A43","pred":"chebi_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/CHEBI_85979"},{"id":"A44","pred":"chebi_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/CHEBI_73616"},{"id":"A45","pred":"chebi_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/CHEBI_141426"},{"id":"A46","pred":"chebi_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A47","pred":"chebi_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/CHEBI_141426"},{"id":"A48","pred":"chebi_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A49","pred":"chebi_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/CHEBI_73616"},{"id":"A50","pred":"chebi_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/CHEBI_141426"},{"id":"A51","pred":"chebi_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_73616"},{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_85979"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A55","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-PD-HP

    {"project":"LitCovid-PD-HP","denotations":[{"id":"T20","span":{"begin":98,"end":101},"obj":"Phenotype"},{"id":"T21","span":{"begin":244,"end":251},"obj":"Phenotype"},{"id":"T22","span":{"begin":475,"end":482},"obj":"Phenotype"},{"id":"T23","span":{"begin":857,"end":860},"obj":"Phenotype"},{"id":"T24","span":{"begin":862,"end":865},"obj":"Phenotype"}],"attributes":[{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0001513"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0001513"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0004808"},{"id":"A24","pred":"hp_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/HP_0020103"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T29","span":{"begin":0,"end":155},"obj":"Sentence"},{"id":"T30","span":{"begin":156,"end":236},"obj":"Sentence"},{"id":"T31","span":{"begin":237,"end":361},"obj":"Sentence"},{"id":"T32","span":{"begin":362,"end":463},"obj":"Sentence"},{"id":"T33","span":{"begin":464,"end":598},"obj":"Sentence"},{"id":"T34","span":{"begin":599,"end":739},"obj":"Sentence"},{"id":"T35","span":{"begin":740,"end":849},"obj":"Sentence"},{"id":"T36","span":{"begin":850,"end":944},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"55","span":{"begin":0,"end":7},"obj":"Species"},{"id":"56","span":{"begin":173,"end":182},"obj":"Species"},{"id":"57","span":{"begin":263,"end":275},"obj":"Species"},{"id":"58","span":{"begin":372,"end":384},"obj":"Species"},{"id":"59","span":{"begin":499,"end":511},"obj":"Species"},{"id":"60","span":{"begin":640,"end":652},"obj":"Species"},{"id":"61","span":{"begin":873,"end":885},"obj":"Species"},{"id":"62","span":{"begin":220,"end":224},"obj":"Disease"},{"id":"63","span":{"begin":369,"end":371},"obj":"Disease"},{"id":"64","span":{"begin":447,"end":451},"obj":"Disease"},{"id":"65","span":{"begin":471,"end":473},"obj":"Disease"},{"id":"66","span":{"begin":475,"end":482},"obj":"Disease"},{"id":"67","span":{"begin":606,"end":608},"obj":"Disease"},{"id":"68","span":{"begin":747,"end":750},"obj":"Disease"},{"id":"69","span":{"begin":833,"end":837},"obj":"Disease"},{"id":"70","span":{"begin":857,"end":860},"obj":"Disease"},{"id":"71","span":{"begin":929,"end":933},"obj":"Disease"}],"attributes":[{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:9606"},{"id":"A56","pred":"tao:has_database_id","subj":"56","obj":"Tax:5059"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"Tax:746128"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"Tax:746128"},{"id":"A59","pred":"tao:has_database_id","subj":"59","obj":"Tax:746128"},{"id":"A60","pred":"tao:has_database_id","subj":"60","obj":"Tax:746128"},{"id":"A61","pred":"tao:has_database_id","subj":"61","obj":"Tax:746128"},{"id":"A62","pred":"tao:has_database_id","subj":"62","obj":"MESH:D003643"},{"id":"A63","pred":"tao:has_database_id","subj":"63","obj":"MESH:D009223"},{"id":"A64","pred":"tao:has_database_id","subj":"64","obj":"MESH:D003643"},{"id":"A65","pred":"tao:has_database_id","subj":"65","obj":"MESH:D009223"},{"id":"A66","pred":"tao:has_database_id","subj":"66","obj":"MESH:D009765"},{"id":"A67","pred":"tao:has_database_id","subj":"67","obj":"MESH:D009223"},{"id":"A68","pred":"tao:has_database_id","subj":"68","obj":"MESH:D015658"},{"id":"A69","pred":"tao:has_database_id","subj":"69","obj":"MESH:D003643"},{"id":"A70","pred":"tao:has_database_id","subj":"70","obj":"MESH:D015470"},{"id":"A71","pred":"tao:has_database_id","subj":"71","obj":"MESH:D003643"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patient ID Sex (M/F) Age Medical history First positive culture CT scan Histological examinationa IPA diagnosis AspICU algorithm Antifungal therapy Outcome\n1 M 86 Hyperchol A. flavus (ETA) No scan available N/A – – None Died, ICU day 10\n2 M 38 Obesity, hyperchol A. fumigatus (BAL) + Positive Proven Absolute Voriconazole, isavuconazole Alive on MV, ICU day 28b\n3 M 62 DM A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Died, ICU day 20\n4 M 73 DM, obesity, AHT, hyperchol A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 24b\n5 M 77 DM, CKD, AHT, pemphigus foliaceus A. fumigatus (BAL) No scan available Positive Proven Absolute Voriconazole Alive on MV, ICU day 21b\n6 M 55 HIV, AHT, hyperchol Negative No scan available Negative – Voriconazole, isavuconazole Died, ICU day 27\n7 M 75 AML, IPA (2012) A. fumigatus (BAL) No scan available N/A – Voriconazole Died, ICU day 8"}