PMC:7264932 / 1751-2368
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"50","span":{"begin":365,"end":368},"obj":"Gene"},{"id":"51","span":{"begin":385,"end":389},"obj":"Gene"},{"id":"52","span":{"begin":0,"end":7},"obj":"Species"},{"id":"53","span":{"begin":56,"end":63},"obj":"Species"},{"id":"54","span":{"begin":231,"end":252},"obj":"Species"},{"id":"55","span":{"begin":253,"end":274},"obj":"Species"},{"id":"56","span":{"begin":275,"end":285},"obj":"Species"},{"id":"57","span":{"begin":36,"end":54},"obj":"Disease"},{"id":"58","span":{"begin":530,"end":543},"obj":"Disease"},{"id":"59","span":{"begin":579,"end":611},"obj":"Disease"}],"attributes":[{"id":"A50","pred":"tao:has_database_id","subj":"50","obj":"Gene:1401"},{"id":"A51","pred":"tao:has_database_id","subj":"51","obj":"Gene:3569"},{"id":"A52","pred":"tao:has_database_id","subj":"52","obj":"Tax:9606"},{"id":"A53","pred":"tao:has_database_id","subj":"53","obj":"Tax:9606"},{"id":"A54","pred":"tao:has_database_id","subj":"54","obj":"Tax:746128"},{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:746128"},{"id":"A56","pred":"tao:has_database_id","subj":"56","obj":"Tax:2697049"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"MESH:D011658"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"MESH:D051437"},{"id":"A59","pred":"tao:has_database_id","subj":"59","obj":"MESH:D055744"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T6","span":{"begin":174,"end":179},"obj":"Body_part"},{"id":"T7","span":{"begin":474,"end":483},"obj":"Body_part"},{"id":"T8","span":{"begin":509,"end":520},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma62852"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma62863"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-UBERON
{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T3","span":{"begin":174,"end":179},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-HP
{"project":"LitCovid-PD-HP","denotations":[{"id":"T18","span":{"begin":36,"end":54},"obj":"Phenotype"},{"id":"T19","span":{"begin":350,"end":353},"obj":"Phenotype"},{"id":"T20","span":{"begin":530,"end":543},"obj":"Phenotype"},{"id":"T21","span":{"begin":579,"end":611},"obj":"Phenotype"}],"attributes":[{"id":"A18","pred":"hp_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/HP_0002206"},{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0000083"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0020103"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T24","span":{"begin":36,"end":54},"obj":"Disease"},{"id":"T25","span":{"begin":275,"end":283},"obj":"Disease"},{"id":"T26","span":{"begin":406,"end":409},"obj":"Disease"},{"id":"T28","span":{"begin":530,"end":543},"obj":"Disease"},{"id":"T29","span":{"begin":598,"end":611},"obj":"Disease"}],"attributes":[{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0002771"},{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0008296"},{"id":"A27","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0015104"},{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0001106"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T10","span":{"begin":20,"end":24},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T11","span":{"begin":20,"end":24},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T12","span":{"begin":76,"end":80},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T13","span":{"begin":76,"end":80},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T14","span":{"begin":391,"end":393},"obj":"http://purl.obolibrary.org/obo/CLO_0008426"},{"id":"T15","span":{"begin":474,"end":483},"obj":"http://purl.obolibrary.org/obo/CL_0000738"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T14","span":{"begin":20,"end":24},"obj":"Chemical"},{"id":"T15","span":{"begin":76,"end":80},"obj":"Chemical"},{"id":"T16","span":{"begin":118,"end":121},"obj":"Chemical"},{"id":"T17","span":{"begin":350,"end":353},"obj":"Chemical"},{"id":"T19","span":{"begin":385,"end":387},"obj":"Chemical"}],"attributes":[{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_30780"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_30780"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A18","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A20","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-PD-GlycoEpitope
{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T3","span":{"begin":99,"end":112},"obj":"GlycoEpitope"},{"id":"T4","span":{"begin":155,"end":168},"obj":"GlycoEpitope"}],"attributes":[{"id":"A3","pred":"glyco_epitope_db_id","subj":"T3","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A4","pred":"glyco_epitope_db_id","subj":"T4","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T11","span":{"begin":0,"end":98},"obj":"Sentence"},{"id":"T12","span":{"begin":99,"end":154},"obj":"Sentence"},{"id":"T13","span":{"begin":155,"end":213},"obj":"Sentence"},{"id":"T14","span":{"begin":214,"end":274},"obj":"Sentence"},{"id":"T15","span":{"begin":275,"end":318},"obj":"Sentence"},{"id":"T16","span":{"begin":319,"end":363},"obj":"Sentence"},{"id":"T17","span":{"begin":364,"end":383},"obj":"Sentence"},{"id":"T18","span":{"begin":384,"end":404},"obj":"Sentence"},{"id":"T19","span":{"begin":405,"end":425},"obj":"Sentence"},{"id":"T20","span":{"begin":426,"end":453},"obj":"Sentence"},{"id":"T21","span":{"begin":454,"end":472},"obj":"Sentence"},{"id":"T22","span":{"begin":473,"end":507},"obj":"Sentence"},{"id":"T23","span":{"begin":508,"end":529},"obj":"Sentence"},{"id":"T24","span":{"begin":530,"end":551},"obj":"Sentence"},{"id":"T25","span":{"begin":552,"end":617},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)\nGalactomannan from BAL (ODI; normal range \u003c1.0) 6.3 6.1\nGalactomannan from serum (ODI; normal range \u003c0.5) 1.5 \u003c0.5\nStandard culture Aspergillus fumigatus Aspergillus fumigatus\nSARS-CoV-2 (at follow up) positive positive\nLaboratory parameters, mean at IPA diagnosis\n CRP (mg/dL) 26 5.1\n IL-6 (pg/mL) 460 82\n PCT (ng/mL) 3.7 0.4\n D-Dimer (μg/L) 4820 14 151\n LDH (U/L) 481 530\n Leucocyte count (G/L) 10.38 14.55\n Lymphocytes (%) 15 7\nRenal failure Yes Yes\nClassical risk factors for invasive pulmonary aspergillosis No No"}