PMC:7264932 / 1751-2368
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 50 | 365-368 | Gene | denotes | CRP | Gene:1401 |
| 51 | 385-389 | Gene | denotes | IL-6 | Gene:3569 |
| 52 | 0-7 | Species | denotes | Patient | Tax:9606 |
| 53 | 56-63 | Species | denotes | Patient | Tax:9606 |
| 54 | 231-252 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
| 55 | 253-274 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
| 56 | 275-285 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 57 | 36-54 | Disease | denotes | pulmonary fibrosis | MESH:D011658 |
| 58 | 530-543 | Disease | denotes | Renal failure | MESH:D051437 |
| 59 | 579-611 | Disease | denotes | invasive pulmonary aspergillosis | MESH:D055744 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T6 | 174-179 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T7 | 474-483 | Body_part | denotes | Leucocyte | http://purl.org/sig/ont/fma/fma62852 |
| T8 | 509-520 | Body_part | denotes | Lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T3 | 174-179 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T18 | 36-54 | Phenotype | denotes | pulmonary fibrosis | http://purl.obolibrary.org/obo/HP_0002206 |
| T19 | 350-353 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T20 | 530-543 | Phenotype | denotes | Renal failure | http://purl.obolibrary.org/obo/HP_0000083 |
| T21 | 579-611 | Phenotype | denotes | invasive pulmonary aspergillosis | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T24 | 36-54 | Disease | denotes | pulmonary fibrosis | http://purl.obolibrary.org/obo/MONDO_0002771 |
| T25 | 275-283 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 406-409 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T28 | 530-543 | Disease | denotes | Renal failure | http://purl.obolibrary.org/obo/MONDO_0001106 |
| T29 | 598-611 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 20-24 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T11 | 20-24 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T12 | 76-80 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T13 | 76-80 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T14 | 391-393 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
| T15 | 474-483 | http://purl.obolibrary.org/obo/CL_0000738 | denotes | Leucocyte |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T14 | 20-24 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T15 | 76-80 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T16 | 118-121 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T17 | 350-353 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T19 | 385-387 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T3 | 99-112 | GlycoEpitope | denotes | Galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
| T4 | 155-168 | GlycoEpitope | denotes | Galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 0-98 | Sentence | denotes | Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors) |
| T12 | 99-154 | Sentence | denotes | Galactomannan from BAL (ODI; normal range <1.0) 6.3 6.1 |
| T13 | 155-213 | Sentence | denotes | Galactomannan from serum (ODI; normal range <0.5) 1.5 <0.5 |
| T14 | 214-274 | Sentence | denotes | Standard culture Aspergillus fumigatus Aspergillus fumigatus |
| T15 | 275-318 | Sentence | denotes | SARS-CoV-2 (at follow up) positive positive |
| T16 | 319-363 | Sentence | denotes | Laboratory parameters, mean at IPA diagnosis |
| T17 | 364-383 | Sentence | denotes | CRP (mg/dL) 26 5.1 |
| T18 | 384-404 | Sentence | denotes | IL-6 (pg/mL) 460 82 |
| T19 | 405-425 | Sentence | denotes | PCT (ng/mL) 3.7 0.4 |
| T20 | 426-453 | Sentence | denotes | D-Dimer (μg/L) 4820 14 151 |
| T21 | 454-472 | Sentence | denotes | LDH (U/L) 481 530 |
| T22 | 473-507 | Sentence | denotes | Leucocyte count (G/L) 10.38 14.55 |
| T23 | 508-529 | Sentence | denotes | Lymphocytes (%) 15 7 |
| T24 | 530-551 | Sentence | denotes | Renal failure Yes Yes |
| T25 | 552-617 | Sentence | denotes | Classical risk factors for invasive pulmonary aspergillosis No No |