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PMC:7264932 / 1662-2573 JSON TXT

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LitCovid-PubTator

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
50	454-457	Gene	denotes	CRP	Gene:1401
51	474-478	Gene	denotes	IL-6	Gene:3569
52	89-96	Species	denotes	Patient	Tax:9606
53	145-152	Species	denotes	Patient	Tax:9606
54	320-341	Species	denotes	Aspergillus fumigatus	Tax:746128
55	342-363	Species	denotes	Aspergillus fumigatus	Tax:746128
56	364-374	Species	denotes	SARS-CoV-2	Tax:2697049
57	125-143	Disease	denotes	pulmonary fibrosis	MESH:D011658
58	619-632	Disease	denotes	Renal failure	MESH:D051437
59	668-700	Disease	denotes	invasive pulmonary aspergillosis	MESH:D055744
61	19-32	Chemical	denotes	galactomannan	MESH:C012990
66	751-754	Gene	denotes	CRP	Gene:1401
67	756-774	Gene	denotes	C-reactive protein	Gene:1401
68	776-780	Gene	denotes	IL-6	Gene:3569
69	802-834	Disease	denotes	invasive pulmonary aspergillosis	MESH:D055744

LitCovid-PD-FMA-UBERON

Id	Subject	Object	Predicate	Lexical cue	fma_id
T5	61-66	Body_part	denotes	serum	http://purl.org/sig/ont/fma/fma63083
T6	263-268	Body_part	denotes	serum	http://purl.org/sig/ont/fma/fma63083
T7	563-572	Body_part	denotes	Leucocyte	http://purl.org/sig/ont/fma/fma62852
T8	598-609	Body_part	denotes	Lymphocytes	http://purl.org/sig/ont/fma/fma62863
T9	767-774	Body_part	denotes	protein	http://purl.org/sig/ont/fma/fma67257
T10	782-795	Body_part	denotes	interleukin 6	http://purl.org/sig/ont/fma/fma264829
T11	782-793	Body_part	denotes	interleukin	http://purl.org/sig/ont/fma/fma86578

LitCovid-PD-UBERON

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T2	61-66	Body_part	denotes	serum	http://purl.obolibrary.org/obo/UBERON_0001977
T3	263-268	Body_part	denotes	serum	http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-HP

Id	Subject	Object	Predicate	Lexical cue	hp_id
T18	125-143	Phenotype	denotes	pulmonary fibrosis	http://purl.obolibrary.org/obo/HP_0002206
T19	439-442	Phenotype	denotes	IPA	http://purl.obolibrary.org/obo/HP_0020103
T20	619-632	Phenotype	denotes	Renal failure	http://purl.obolibrary.org/obo/HP_0000083
T21	668-700	Phenotype	denotes	invasive pulmonary aspergillosis	http://purl.obolibrary.org/obo/HP_0020103
T22	797-800	Phenotype	denotes	IPA	http://purl.obolibrary.org/obo/HP_0020103
T23	802-834	Phenotype	denotes	invasive pulmonary aspergillosis	http://purl.obolibrary.org/obo/HP_0020103

LitCovid-PD-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T24	125-143	Disease	denotes	pulmonary fibrosis	http://purl.obolibrary.org/obo/MONDO_0002771
T25	364-372	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T26	495-498	Disease	denotes	PCT	http://purl.obolibrary.org/obo/MONDO_0008296\|http://purl.obolibrary.org/obo/MONDO_0015104
T28	619-632	Disease	denotes	Renal failure	http://purl.obolibrary.org/obo/MONDO_0001106
T29	687-700	Disease	denotes	aspergillosis	http://purl.obolibrary.org/obo/MONDO_0005657
T30	821-834	Disease	denotes	aspergillosis	http://purl.obolibrary.org/obo/MONDO_0005657
T31	892-895	Disease	denotes	PCT	http://purl.obolibrary.org/obo/MONDO_0008296\|http://purl.obolibrary.org/obo/MONDO_0015104

LitCovid-PD-CLO

Id	Subject	Object	Predicate	Lexical cue
T10	109-113	http://purl.obolibrary.org/obo/UBERON_0003101	denotes	male
T11	109-113	http://www.ebi.ac.uk/efo/EFO_0000970	denotes	male
T12	165-169	http://purl.obolibrary.org/obo/UBERON_0003101	denotes	male
T13	165-169	http://www.ebi.ac.uk/efo/EFO_0000970	denotes	male
T14	480-482	http://purl.obolibrary.org/obo/CLO_0008426	denotes	pg
T15	563-572	http://purl.obolibrary.org/obo/CL_0000738	denotes	Leucocyte
T16	782-795	http://purl.obolibrary.org/obo/PR_000001393	denotes	interleukin 6

LitCovid-PD-CHEBI

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T13	19-32	Chemical	denotes	galactomannan	http://purl.obolibrary.org/obo/CHEBI_27680
T14	109-113	Chemical	denotes	male	http://purl.obolibrary.org/obo/CHEBI_30780
T15	165-169	Chemical	denotes	male	http://purl.obolibrary.org/obo/CHEBI_30780
T16	207-210	Chemical	denotes	BAL	http://purl.obolibrary.org/obo/CHEBI_64198
T17	439-442	Chemical	denotes	IPA	http://purl.obolibrary.org/obo/CHEBI_17824\|http://purl.obolibrary.org/obo/CHEBI_30802
T19	474-476	Chemical	denotes	IL	http://purl.obolibrary.org/obo/CHEBI_63895\|http://purl.obolibrary.org/obo/CHEBI_74072
T21	722-725	Chemical	denotes	BAL	http://purl.obolibrary.org/obo/CHEBI_64198
T22	767-774	Chemical	denotes	protein	http://purl.obolibrary.org/obo/CHEBI_36080
T23	776-778	Chemical	denotes	IL	http://purl.obolibrary.org/obo/CHEBI_63895\|http://purl.obolibrary.org/obo/CHEBI_74072
T25	797-800	Chemical	denotes	IPA	http://purl.obolibrary.org/obo/CHEBI_17824\|http://purl.obolibrary.org/obo/CHEBI_30802
T27	841-848	Chemical	denotes	lactate	http://purl.obolibrary.org/obo/CHEBI_24996

LitCovid-PD-GlycoEpitope

Id	Subject	Object	Predicate	Lexical cue	glyco_epitope_db_id
T2	19-32	GlycoEpitope	denotes	galactomannan	http://www.glycoepitope.jp/epitopes/EP0510
T3	188-201	GlycoEpitope	denotes	Galactomannan	http://www.glycoepitope.jp/epitopes/EP0510
T4	244-257	GlycoEpitope	denotes	Galactomannan	http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id	Subject	Object	Predicate	Lexical cue
T10	0-88	Sentence	denotes	Table 1 Results of galactomannan (bronchoalveolar lavage and serum) and standard culture
T11	89-187	Sentence	denotes	Patient 1(80 years, male, suspected pulmonary fibrosis) Patient 2(70 years, male, no risk factors)
T12	188-243	Sentence	denotes	Galactomannan from BAL (ODI; normal range <1.0) 6.3 6.1
T13	244-302	Sentence	denotes	Galactomannan from serum (ODI; normal range <0.5) 1.5 <0.5
T14	303-363	Sentence	denotes	Standard culture Aspergillus fumigatus Aspergillus fumigatus
T15	364-407	Sentence	denotes	SARS-CoV-2 (at follow up) positive positive
T16	408-452	Sentence	denotes	Laboratory parameters, mean at IPA diagnosis
T17	453-472	Sentence	denotes	CRP (mg/dL) 26 5.1
T18	473-493	Sentence	denotes	IL-6 (pg/mL) 460 82
T19	494-514	Sentence	denotes	PCT (ng/mL) 3.7 0.4
T20	515-542	Sentence	denotes	D-Dimer (μg/L) 4820 14 151
T21	543-561	Sentence	denotes	LDH (U/L) 481 530
T22	562-596	Sentence	denotes	Leucocyte count (G/L) 10.38 14.55
T23	597-618	Sentence	denotes	Lymphocytes (%) 15 7
T24	619-640	Sentence	denotes	Renal failure Yes Yes
T25	641-706	Sentence	denotes	Classical risk factors for invasive pulmonary aspergillosis No No
T26	707-911	Sentence	denotes	Abbreviations: BAL, bronchoalveolar lavage; CRP, C-reactive protein; IL-6, interleukin 6; IPA, invasive pulmonary aspergillosis; LDH, lactate dehydrogenase; ODI, optical density index; PCT, procalcitonin.