PMC:7258756 / 7141-7743
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 137 | 307-311 | Gene | denotes | RdRp | Gene:43740578 |
| 138 | 317-321 | Gene | denotes | RdRp | Gene:43740578 |
| 139 | 216-226 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T26 | 10-13 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T27 | 64-67 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T28 | 163-166 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T29 | 329-333 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T30 | 340-344 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T31 | 354-358 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T32 | 582-588 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T69 | 37-39 | Disease | denotes | TS | http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455 |
| T71 | 216-224 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T72 | 216-220 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 192-199 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T62 | 329-333 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T63 | 340-344 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T64 | 354-358 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T65 | 434-439 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T66 | 482-486 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T67 | 596-601 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T16 | 37-39 | Chemical | denotes | TS | http://purl.obolibrary.org/obo/CHEBI_73664 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9 | 346-353 | http://purl.obolibrary.org/obo/GO_0004526 | denotes | RNase P |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 0-148 | Sentence | denotes | The viral RNA was extracted from the TS sample using the Magmax RNA extraction kit (Applied Biosystems, USA) as per the manufacturer's instructions. |
| T57 | 149-345 | Sentence | denotes | The extracted RNA was immediately used for testing the presence of SARS-CoV-2 using the real-time RT-PCR protocol published by the WHO12 for the detection of RdRp (1), RdRp (2), E gene and N gene. |
| T58 | 346-409 | Sentence | denotes | RNase P gene was used as the internal control for the analysis. |
| T59 | 410-499 | Sentence | denotes | Confirmatory laboratory tests were performed as per the WHO-recommended test protocols13. |
| T60 | 500-602 | Sentence | denotes | These samples were also sequenced using the NGS approach to retrieve the complete genome of the virus. |