PMC:7258756 / 436-1044 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"15","span":{"begin":158,"end":162},"obj":"Gene"},{"id":"16","span":{"begin":168,"end":172},"obj":"Gene"},{"id":"17","span":{"begin":181,"end":182},"obj":"Gene"},{"id":"18","span":{"begin":134,"end":135},"obj":"Gene"},{"id":"19","span":{"begin":381,"end":391},"obj":"Species"},{"id":"26","span":{"begin":510,"end":520},"obj":"Species"}],"attributes":[{"id":"A15","pred":"tao:has_database_id","subj":"15","obj":"Gene:43740578"},{"id":"A16","pred":"tao:has_database_id","subj":"16","obj":"Gene:43740578"},{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"Gene:43740575"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"Gene:43740570"},{"id":"A19","pred":"tao:has_database_id","subj":"19","obj":"Tax:2697049"},{"id":"A26","pred":"tao:has_database_id","subj":"26","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":49,"end":55},"obj":"Body_part"},{"id":"T3","span":{"begin":136,"end":140},"obj":"Body_part"},{"id":"T4","span":{"begin":183,"end":187},"obj":"Body_part"},{"id":"T5","span":{"begin":356,"end":360},"obj":"Body_part"},{"id":"T6","span":{"begin":546,"end":557},"obj":"Body_part"},{"id":"T7","span":{"begin":559,"end":566},"obj":"Body_part"},{"id":"T8","span":{"begin":602,"end":608},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":49,"end":55},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T11","span":{"begin":381,"end":389},"obj":"Disease"},{"id":"T12","span":{"begin":381,"end":385},"obj":"Disease"},{"id":"T13","span":{"begin":510,"end":518},"obj":"Disease"},{"id":"T14","span":{"begin":510,"end":514},"obj":"Disease"}],"attributes":[{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T5","span":{"begin":86,"end":87},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6","span":{"begin":136,"end":140},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T7","span":{"begin":183,"end":187},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T8","span":{"begin":347,"end":348},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T9","span":{"begin":354,"end":360},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T10","span":{"begin":446,"end":447},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T11","span":{"begin":589,"end":590},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":546,"end":557},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":198,"end":219},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T2","span":{"begin":206,"end":219},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}

{"project":"LitCovid-sentences","denotations":[{"id":"T7","span":{"begin":40,"end":48},"obj":"Sentence"},{"id":"T8","span":{"begin":49,"end":278},"obj":"Sentence"},{"id":"T9","span":{"begin":279,"end":418},"obj":"Sentence"},{"id":"T10","span":{"begin":420,"end":428},"obj":"Sentence"},{"id":"T11","span":{"begin":429,"end":521},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ositive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nResults:\nThree cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2. Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome"}