PMC:7258756 / 38287-39433 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7258756","sourcedb":"PMC","sourceid":"7258756","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7258756","text":"Supplementary Table I Acknowledgement for the list of the sequences downloaded from GISAID database that were used in the study\nSupplementary Fig. 1 Receptor-binding domain and mutations within the ‘S’ protein of the Indian severe acute respiratory syndrome coronavirus 2 mapped on the respective modelled structure (A) Side view (B) Top view.\nSupplementary Fig. 2 Conformational B-cell epitopes predicted on the S protein of the Indian severe acute respiratory syndrome coronavirus (SARS-CoV-2) using the pre-fusion structure of SARS-CoV-1 (6ACC.PDB; 87.29%) (colour key: blue - epitope 1; green - epitope 2; yellow - epitope 4; pink - epitope 5 as indicated in Supplementary Table III) (A) Top view (B) Side view.\nSupplementary Fig. 3 Alignment of Wuhan severe acute respiratory syndrome coronavirus 2, Indian severe acute respiratory syndrome (SARS-CoV-2) and SARS-CoV-1 (accession number: NC_004718) spike protein using CLC Genomics workbench. Boxes represent the different insertions in the spike protein region of Indian SARS-CoV-2 (deletions in SARS-CoV-1. S1 domain is highlighted in light red colour and the S2 domain in blue colour.","divisions":[{"label":"label","span":{"begin":0,"end":21}},{"label":"caption","span":{"begin":23,"end":128}},{"label":"p","span":{"begin":23,"end":128}},{"label":"label","span":{"begin":129,"end":149}},{"label":"caption","span":{"begin":151,"end":345}},{"label":"p","span":{"begin":151,"end":345}},{"label":"label","span":{"begin":346,"end":366}},{"label":"caption","span":{"begin":368,"end":718}},{"label":"p","span":{"begin":368,"end":718}},{"label":"label","span":{"begin":719,"end":739}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T252","span":{"begin":204,"end":211},"obj":"Body_part"},{"id":"T253","span":{"begin":385,"end":389},"obj":"Body_part"},{"id":"T254","span":{"begin":418,"end":425},"obj":"Body_part"},{"id":"T255","span":{"begin":914,"end":921},"obj":"Body_part"},{"id":"T256","span":{"begin":1006,"end":1013},"obj":"Body_part"}],"attributes":[{"id":"A252","pred":"fma_id","subj":"T252","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A253","pred":"fma_id","subj":"T253","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A254","pred":"fma_id","subj":"T254","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A255","pred":"fma_id","subj":"T255","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A256","pred":"fma_id","subj":"T256","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T252","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T253","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T254","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T255","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T256","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T206","span":{"begin":226,"end":273},"obj":"Disease"},{"id":"T207","span":{"begin":226,"end":259},"obj":"Disease"},{"id":"T208","span":{"begin":440,"end":473},"obj":"Disease"},{"id":"T209","span":{"begin":487,"end":495},"obj":"Disease"},{"id":"T210","span":{"begin":487,"end":491},"obj":"Disease"},{"id":"T211","span":{"begin":533,"end":541},"obj":"Disease"},{"id":"T212","span":{"begin":533,"end":537},"obj":"Disease"},{"id":"T213","span":{"begin":760,"end":807},"obj":"Disease"},{"id":"T214","span":{"begin":760,"end":793},"obj":"Disease"},{"id":"T215","span":{"begin":816,"end":849},"obj":"Disease"},{"id":"T216","span":{"begin":851,"end":859},"obj":"Disease"},{"id":"T217","span":{"begin":851,"end":855},"obj":"Disease"},{"id":"T218","span":{"begin":867,"end":875},"obj":"Disease"},{"id":"T219","span":{"begin":867,"end":871},"obj":"Disease"},{"id":"T220","span":{"begin":928,"end":931},"obj":"Disease"},{"id":"T221","span":{"begin":1031,"end":1039},"obj":"Disease"},{"id":"T222","span":{"begin":1031,"end":1035},"obj":"Disease"},{"id":"T223","span":{"begin":1056,"end":1064},"obj":"Disease"},{"id":"T224","span":{"begin":1056,"end":1060},"obj":"Disease"}],"attributes":[{"id":"A206","pred":"mondo_id","subj":"T206","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A207","pred":"mondo_id","subj":"T207","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A208","pred":"mondo_id","subj":"T208","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A209","pred":"mondo_id","subj":"T209","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A210","pred":"mondo_id","subj":"T210","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A211","pred":"mondo_id","subj":"T211","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A212","pred":"mondo_id","subj":"T212","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A213","pred":"mondo_id","subj":"T213","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A214","pred":"mondo_id","subj":"T214","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A215","pred":"mondo_id","subj":"T215","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A216","pred":"mondo_id","subj":"T216","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A217","pred":"mondo_id","subj":"T217","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A218","pred":"mondo_id","subj":"T218","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A219","pred":"mondo_id","subj":"T219","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A220","pred":"mondo_id","subj":"T220","obj":"http://purl.obolibrary.org/obo/MONDO_0004315"},{"id":"A221","pred":"mondo_id","subj":"T221","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A222","pred":"mondo_id","subj":"T222","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A223","pred":"mondo_id","subj":"T223","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A224","pred":"mondo_id","subj":"T224","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T206","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T207","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T208","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T209","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T210","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T211","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T212","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T213","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T214","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T215","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T216","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T217","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T218","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T219","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T220","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T221","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T222","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T223","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T224","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T314","span":{"begin":319,"end":320},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T315","span":{"begin":333,"end":334},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T316","span":{"begin":383,"end":389},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T317","span":{"begin":692,"end":693},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T318","span":{"begin":705,"end":706},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T319","span":{"begin":928,"end":931},"obj":"http://purl.obolibrary.org/obo/CLO_0002494"},{"id":"T320","span":{"begin":1068,"end":1070},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T321","span":{"begin":1121,"end":1123},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T322","span":{"begin":1121,"end":1123},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"}],"attributes":[{"subj":"T314","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T315","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T316","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T317","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T318","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T319","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T320","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T321","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T322","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T165","span":{"begin":204,"end":211},"obj":"Chemical"},{"id":"T166","span":{"begin":418,"end":425},"obj":"Chemical"},{"id":"T167","span":{"begin":583,"end":590},"obj":"Chemical"},{"id":"T168","span":{"begin":602,"end":609},"obj":"Chemical"},{"id":"T169","span":{"begin":622,"end":629},"obj":"Chemical"},{"id":"T170","span":{"begin":640,"end":647},"obj":"Chemical"},{"id":"T171","span":{"begin":914,"end":921},"obj":"Chemical"},{"id":"T172","span":{"begin":1006,"end":1013},"obj":"Chemical"},{"id":"T173","span":{"begin":1121,"end":1123},"obj":"Chemical"}],"attributes":[{"id":"A165","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A166","pred":"chebi_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A167","pred":"chebi_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A168","pred":"chebi_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A169","pred":"chebi_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A170","pred":"chebi_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A171","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A172","pred":"chebi_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A173","pred":"chebi_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"subj":"T165","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T166","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T167","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T168","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T169","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T170","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T171","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T254","span":{"begin":0,"end":128},"obj":"Sentence"},{"id":"T255","span":{"begin":129,"end":345},"obj":"Sentence"},{"id":"T256","span":{"begin":346,"end":718},"obj":"Sentence"},{"id":"T257","span":{"begin":719,"end":951},"obj":"Sentence"},{"id":"T258","span":{"begin":952,"end":1067},"obj":"Sentence"},{"id":"T259","span":{"begin":1068,"end":1146},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T254","pred":"source","obj":"LitCovid-sentences"},{"subj":"T255","pred":"source","obj":"LitCovid-sentences"},{"subj":"T256","pred":"source","obj":"LitCovid-sentences"},{"subj":"T257","pred":"source","obj":"LitCovid-sentences"},{"subj":"T258","pred":"source","obj":"LitCovid-sentences"},{"subj":"T259","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#a893ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#97ec93"},{"id":"LitCovid-PD-CLO","color":"#ec93b1"},{"id":"LitCovid-PD-CHEBI","color":"#93cbec"},{"id":"LitCovid-sentences","color":"#e5ec93"}]}]}}