> top > docs > PMC:7258756 > spans > 38287-39433 > annotations

PMC:7258756 / 38287-39433 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T252 204-211 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T253 385-389 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T254 418-425 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T255 914-921 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T256 1006-1013 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T206 226-273 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T207 226-259 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T208 440-473 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T209 487-495 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T210 487-491 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T211 533-541 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T212 533-537 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T213 760-807 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T214 760-793 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T215 816-849 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T216 851-859 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T217 851-855 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T218 867-875 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T219 867-871 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T220 928-931 Disease denotes CLC http://purl.obolibrary.org/obo/MONDO_0004315
T221 1031-1039 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T222 1031-1035 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T223 1056-1064 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T224 1056-1060 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T314 319-320 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T315 333-334 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T316 383-389 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T317 692-693 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T318 705-706 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T319 928-931 http://purl.obolibrary.org/obo/CLO_0002494 denotes CLC
T320 1068-1070 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T321 1121-1123 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T322 1121-1123 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T165 204-211 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T166 418-425 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T167 583-590 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T168 602-609 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T169 622-629 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T170 640-647 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T171 914-921 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T172 1006-1013 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T173 1121-1123 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T254 0-128 Sentence denotes Supplementary Table I Acknowledgement for the list of the sequences downloaded from GISAID database that were used in the study
T255 129-345 Sentence denotes Supplementary Fig. 1 Receptor-binding domain and mutations within the ‘S’ protein of the Indian severe acute respiratory syndrome coronavirus 2 mapped on the respective modelled structure (A) Side view (B) Top view.
T256 346-718 Sentence denotes Supplementary Fig. 2 Conformational B-cell epitopes predicted on the S protein of the Indian severe acute respiratory syndrome coronavirus (SARS-CoV-2) using the pre-fusion structure of SARS-CoV-1 (6ACC.PDB; 87.29%) (colour key: blue - epitope 1; green - epitope 2; yellow - epitope 4; pink - epitope 5 as indicated in Supplementary Table III) (A) Top view (B) Side view.
T257 719-951 Sentence denotes Supplementary Fig. 3 Alignment of Wuhan severe acute respiratory syndrome coronavirus 2, Indian severe acute respiratory syndrome (SARS-CoV-2) and SARS-CoV-1 (accession number: NC_004718) spike protein using CLC Genomics workbench.
T258 952-1067 Sentence denotes Boxes represent the different insertions in the spike protein region of Indian SARS-CoV-2 (deletions in SARS-CoV-1.
T259 1068-1146 Sentence denotes S1 domain is highlighted in light red colour and the S2 domain in blue colour.