PMC:7258756 / 38287-39433
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T252 | 204-211 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T253 | 385-389 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T254 | 418-425 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T255 | 914-921 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T256 | 1006-1013 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T206 | 226-273 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T207 | 226-259 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T208 | 440-473 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T209 | 487-495 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T210 | 487-491 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T211 | 533-541 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T212 | 533-537 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T213 | 760-807 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T214 | 760-793 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T215 | 816-849 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T216 | 851-859 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T217 | 851-855 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T218 | 867-875 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T219 | 867-871 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T220 | 928-931 | Disease | denotes | CLC | http://purl.obolibrary.org/obo/MONDO_0004315 |
T221 | 1031-1039 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T222 | 1031-1035 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T223 | 1056-1064 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T224 | 1056-1060 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T314 | 319-320 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T315 | 333-334 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T316 | 383-389 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B-cell |
T317 | 692-693 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T318 | 705-706 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T319 | 928-931 | http://purl.obolibrary.org/obo/CLO_0002494 | denotes | CLC |
T320 | 1068-1070 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T321 | 1121-1123 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T322 | 1121-1123 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T165 | 204-211 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T166 | 418-425 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T167 | 583-590 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T168 | 602-609 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T169 | 622-629 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T170 | 640-647 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
T171 | 914-921 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T172 | 1006-1013 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T173 | 1121-1123 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T254 | 0-128 | Sentence | denotes | Supplementary Table I Acknowledgement for the list of the sequences downloaded from GISAID database that were used in the study |
T255 | 129-345 | Sentence | denotes | Supplementary Fig. 1 Receptor-binding domain and mutations within the ‘S’ protein of the Indian severe acute respiratory syndrome coronavirus 2 mapped on the respective modelled structure (A) Side view (B) Top view. |
T256 | 346-718 | Sentence | denotes | Supplementary Fig. 2 Conformational B-cell epitopes predicted on the S protein of the Indian severe acute respiratory syndrome coronavirus (SARS-CoV-2) using the pre-fusion structure of SARS-CoV-1 (6ACC.PDB; 87.29%) (colour key: blue - epitope 1; green - epitope 2; yellow - epitope 4; pink - epitope 5 as indicated in Supplementary Table III) (A) Top view (B) Side view. |
T257 | 719-951 | Sentence | denotes | Supplementary Fig. 3 Alignment of Wuhan severe acute respiratory syndrome coronavirus 2, Indian severe acute respiratory syndrome (SARS-CoV-2) and SARS-CoV-1 (accession number: NC_004718) spike protein using CLC Genomics workbench. |
T258 | 952-1067 | Sentence | denotes | Boxes represent the different insertions in the spike protein region of Indian SARS-CoV-2 (deletions in SARS-CoV-1. |
T259 | 1068-1146 | Sentence | denotes | S1 domain is highlighted in light red colour and the S2 domain in blue colour. |