PMC:7258756 / 34511-35103 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"519","span":{"begin":86,"end":89},"obj":"Gene"},{"id":"520","span":{"begin":26,"end":31},"obj":"Gene"},{"id":"521","span":{"begin":53,"end":61},"obj":"Species"},{"id":"522","span":{"begin":68,"end":78},"obj":"Species"},{"id":"523","span":{"begin":170,"end":180},"obj":"Species"},{"id":"524","span":{"begin":240,"end":248},"obj":"Species"},{"id":"525","span":{"begin":558,"end":567},"obj":"Disease"}],"attributes":[{"id":"A519","pred":"tao:has_database_id","subj":"519","obj":"Gene:6195"},{"id":"A520","pred":"tao:has_database_id","subj":"520","obj":"Gene:43740568"},{"id":"A521","pred":"tao:has_database_id","subj":"521","obj":"Tax:694009"},{"id":"A522","pred":"tao:has_database_id","subj":"522","obj":"Tax:2697049"},{"id":"A523","pred":"tao:has_database_id","subj":"523","obj":"Tax:2697049"},{"id":"A524","pred":"tao:has_database_id","subj":"524","obj":"Tax:694009"},{"id":"A525","pred":"tao:has_database_id","subj":"525","obj":"MESH:D007239"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)). Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T233","span":{"begin":32,"end":39},"obj":"Body_part"},{"id":"T234","span":{"begin":136,"end":146},"obj":"Body_part"},{"id":"T235","span":{"begin":502,"end":508},"obj":"Body_part"}],"attributes":[{"id":"A233","pred":"fma_id","subj":"T233","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A234","pred":"fma_id","subj":"T234","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A235","pred":"fma_id","subj":"T235","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)). Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T185","span":{"begin":53,"end":57},"obj":"Disease"},{"id":"T186","span":{"begin":68,"end":76},"obj":"Disease"},{"id":"T187","span":{"begin":68,"end":72},"obj":"Disease"},{"id":"T188","span":{"begin":170,"end":178},"obj":"Disease"},{"id":"T189","span":{"begin":170,"end":174},"obj":"Disease"},{"id":"T190","span":{"begin":240,"end":244},"obj":"Disease"},{"id":"T191","span":{"begin":558,"end":567},"obj":"Disease"}],"attributes":[{"id":"A185","pred":"mondo_id","subj":"T185","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A186","pred":"mondo_id","subj":"T186","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A187","pred":"mondo_id","subj":"T187","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A188","pred":"mondo_id","subj":"T188","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A189","pred":"mondo_id","subj":"T189","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A190","pred":"mondo_id","subj":"T190","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A191","pred":"mondo_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)). Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T148","span":{"begin":32,"end":39},"obj":"Chemical"},{"id":"T149","span":{"begin":136,"end":146},"obj":"Chemical"}],"attributes":[{"id":"A148","pred":"chebi_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A149","pred":"chebi_id","subj":"T149","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"}],"text":"From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)). Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed."}

{"project":"LitCovid-sentences","denotations":[{"id":"T230","span":{"begin":0,"end":386},"obj":"Sentence"},{"id":"T231","span":{"begin":387,"end":592},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)). Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed."}