PMC:7258756 / 32241-32916
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 475 | 319-320 | Gene | denotes | N | Gene:43740575 |
| 476 | 263-271 | Species | denotes | patients | Tax:9606 |
| 477 | 601-609 | Species | denotes | patients | Tax:9606 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T219 | 169-175 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T220 | 229-235 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T221 | 237-242 | Body_part | denotes | urine | http://purl.org/sig/ont/fma/fma12274 |
| T222 | 247-252 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
| T223 | 321-325 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T224 | 396-402 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T225 | 568-574 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
| T226 | 622-628 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
| T227 | 662-665 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 229-235 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T8 | 237-242 | Body_part | denotes | urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
| T9 | 247-252 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T10 | 396-402 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T11 | 568-574 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
| T12 | 622-628 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T171 | 33-35 | Disease | denotes | TS | http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455 |
| T173 | 389-391 | Disease | denotes | TS | http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T258 | 156-157 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T259 | 321-325 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T260 | 542-547 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T261 | 588-590 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T262 | 629-636 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T135 | 33-35 | Chemical | denotes | TS | http://purl.obolibrary.org/obo/CHEBI_73664 |
| T136 | 389-391 | Chemical | denotes | TS | http://purl.obolibrary.org/obo/CHEBI_73664 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T216 | 0-176 | Sentence | denotes | The low viral copy number of the TS specimen from case 2 could be the possible reason for lesser viral reads being retrieved during the NGS run, leading to a fragmented genome. |
| T217 | 177-318 | Sentence | denotes | The recent study from China on serial samples (TSs, sputum, urine and stool) from two patients followed days 3-12 and days 4-15 post onset20. |
| T218 | 319-519 | Sentence | denotes | N gene-specific real-time RT-PCR assay showed that the viral loads in TS and sputum samples peaked at around 5-6 days after symptom onset, ranging from around 104-107 copies per ml during this time20. |
| T219 | 520-675 | Sentence | denotes | In another study, the virus was detected in the saliva specimens of 11 of the 12 patients, and serial saliva testing showed declines of viral RNA levels21. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32242873-31950516-47036570 | 478-481 | 31950516 | denotes | 104 |
| T37244 | 478-481 | 31950516 | denotes | 104 |