PMC:7258756 / 276-859 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7258756","sourcedb":"PMC","sourceid":"7258756","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7258756","text":"2 as per the advisory of the Ministry of Health and Family Welfare. The objective of this study was to characterize SARS-CoV-2 sequences from three identified positive cases as on February 29, 2020.\n\nMethods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.\n\nRes","divisions":[{"label":"sec","span":{"begin":200,"end":578}},{"label":"title","span":{"begin":200,"end":208}},{"label":"p","span":{"begin":209,"end":578}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"9","span":{"begin":116,"end":126},"obj":"Species"},{"id":"15","span":{"begin":318,"end":322},"obj":"Gene"},{"id":"16","span":{"begin":328,"end":332},"obj":"Gene"},{"id":"17","span":{"begin":341,"end":342},"obj":"Gene"},{"id":"18","span":{"begin":294,"end":295},"obj":"Gene"},{"id":"19","span":{"begin":541,"end":551},"obj":"Species"}],"attributes":[{"id":"A9","pred":"tao:has_database_id","subj":"9","obj":"Tax:2697049"},{"id":"A15","pred":"tao:has_database_id","subj":"15","obj":"Gene:43740578"},{"id":"A16","pred":"tao:has_database_id","subj":"16","obj":"Gene:43740578"},{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"Gene:43740575"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"Gene:43740570"},{"id":"A19","pred":"tao:has_database_id","subj":"19","obj":"Tax:2697049"},{"subj":"9","pred":"source","obj":"LitCovid-PubTator"},{"subj":"15","pred":"source","obj":"LitCovid-PubTator"},{"subj":"16","pred":"source","obj":"LitCovid-PubTator"},{"subj":"17","pred":"source","obj":"LitCovid-PubTator"},{"subj":"18","pred":"source","obj":"LitCovid-PubTator"},{"subj":"19","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":209,"end":215},"obj":"Body_part"},{"id":"T3","span":{"begin":296,"end":300},"obj":"Body_part"},{"id":"T4","span":{"begin":343,"end":347},"obj":"Body_part"},{"id":"T5","span":{"begin":516,"end":520},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":209,"end":215},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T9","span":{"begin":116,"end":124},"obj":"Disease"},{"id":"T10","span":{"begin":116,"end":120},"obj":"Disease"},{"id":"T11","span":{"begin":541,"end":549},"obj":"Disease"},{"id":"T12","span":{"begin":541,"end":545},"obj":"Disease"}],"attributes":[{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T4","span":{"begin":72,"end":81},"obj":"http://purl.obolibrary.org/obo/BFO_0000030"},{"id":"T5","span":{"begin":246,"end":247},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6","span":{"begin":296,"end":300},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T7","span":{"begin":343,"end":347},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T8","span":{"begin":507,"end":508},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T9","span":{"begin":514,"end":520},"obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"attributes":[{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":358,"end":379},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T2","span":{"begin":366,"end":379},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T2","pred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