PMC:7258756 / 276-859
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 9 | 116-126 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 15 | 318-322 | Gene | denotes | RdRp | Gene:43740578 |
| 16 | 328-332 | Gene | denotes | RdRp | Gene:43740578 |
| 17 | 341-342 | Gene | denotes | N | Gene:43740575 |
| 18 | 294-295 | Gene | denotes | E | Gene:43740570 |
| 19 | 541-551 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 209-215 | Body_part | denotes | Throat | http://purl.org/sig/ont/fma/fma228738 |
| T3 | 296-300 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T4 | 343-347 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T5 | 516-520 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 209-215 | Body_part | denotes | Throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T9 | 116-124 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T10 | 116-120 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T11 | 541-549 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T12 | 541-545 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 72-81 | http://purl.obolibrary.org/obo/BFO_0000030 | denotes | objective |
| T5 | 246-247 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T6 | 296-300 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T7 | 343-347 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T8 | 507-508 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T9 | 514-520 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 358-379 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T2 | 366-379 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 68-198 | Sentence | denotes | The objective of this study was to characterize SARS-CoV-2 sequences from three identified positive cases as on February 29, 2020. |
| T7 | 200-208 | Sentence | denotes | Methods: |
| T8 | 209-438 | Sentence | denotes | Throat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. |
| T9 | 439-578 | Sentence | denotes | Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken. |