PMC:7258756 / 17105-17870
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 258 | 681-686 | Gene | denotes | spike | Gene:43740568 |
| 259 | 442-447 | Gene | denotes | spike | Gene:43740568 |
| 260 | 174-179 | Gene | denotes | spike | Gene:43740568 |
| 261 | 82-87 | Gene | denotes | spike | Gene:43740568 |
| 262 | 118-122 | Gene | denotes | Hu-1 | Gene:6195 |
| 263 | 7-17 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 264 | 485-495 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 265 | 535-545 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 266 | 581-591 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 267 | 401-409 | Chemical | denotes | tyrosine | MESH:D014443 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T88 | 88-95 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T89 | 180-187 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T90 | 372-382 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T91 | 401-409 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T92 | 448-452 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T93 | 687-694 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T141 | 7-15 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T142 | 7-11 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T143 | 485-493 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T144 | 485-489 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T145 | 535-543 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T146 | 535-539 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T147 | 581-589 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T148 | 581-585 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T116 | 71-74 | http://purl.obolibrary.org/obo/CLO_0037067 | denotes | Val |
| T117 | 364-365 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T118 | 448-452 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T119 | 702-710 | http://purl.obolibrary.org/obo/UBERON_0007651 | denotes | junction |
| T120 | 714-716 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T121 | 721-723 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T122 | 721-723 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T75 | 51-54 | Chemical | denotes | Arg | http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29952 |
| T77 | 55-58 | Chemical | denotes | Ile | http://purl.obolibrary.org/obo/CHEBI_17191|http://purl.obolibrary.org/obo/CHEBI_30009 |
| T79 | 67-70 | Chemical | denotes | Ala | http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217 |
| T81 | 71-74 | Chemical | denotes | Val | http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015 |
| T83 | 88-95 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T84 | 180-187 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T85 | 372-382 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T86 | 401-417 | Chemical | denotes | tyrosine residue | http://purl.obolibrary.org/obo/CHEBI_32789 |
| T87 | 401-409 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T88 | 687-694 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T89 | 721-723 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T131 | 0-132 | Sentence | denotes | Indian SARS-CoV-2 sequences showed two changes 408 Arg→Ile and 930 Ala→Val in the spike protein compared to the Wuhan Hu-1 sequence. |
| T132 | 133-351 | Sentence | denotes | The mutations were further mapped on the spike protein model of the Indian sequence (Supplementary Fig. 1 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm6.pdf)). |
| T133 | 352-556 | Sentence | denotes | Deletion of a three-nucleotide stretch, encoding tyrosine residue at position 144, of the spike gene was also observed in the Indian SARS-CoV-2 from case 1 when compared to the other SARS-CoV-2 sequences. |
| T134 | 557-765 | Sentence | denotes | As noted in the earlier SARS-CoV-2 sequences, both the Indian sequences possessed the polybasic cleavage site (RRAR) in the spike protein at the junction of S1 and S2, the two subunits of the spike protein19. |