PMC:7258756 / 13854-14568 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"201","span":{"begin":333,"end":343},"obj":"Species"},{"id":"208","span":{"begin":87,"end":91},"obj":"Gene"},{"id":"209","span":{"begin":97,"end":101},"obj":"Gene"},{"id":"210","span":{"begin":118,"end":119},"obj":"Gene"},{"id":"211","span":{"begin":107,"end":108},"obj":"Gene"},{"id":"212","span":{"begin":186,"end":233},"obj":"Species"},{"id":"213","span":{"begin":235,"end":245},"obj":"Species"}],"attributes":[{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Tax:2697049"},{"id":"A208","pred":"tao:has_database_id","subj":"208","obj":"Gene:43740578"},{"id":"A209","pred":"tao:has_database_id","subj":"209","obj":"Gene:43740578"},{"id":"A210","pred":"tao:has_database_id","subj":"210","obj":"Gene:43740575"},{"id":"A211","pred":"tao:has_database_id","subj":"211","obj":"Gene:43740570"},{"id":"A212","pred":"tao:has_database_id","subj":"212","obj":"Tax:2697049"},{"id":"A213","pred":"tao:has_database_id","subj":"213","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T68","span":{"begin":109,"end":113},"obj":"Body_part"},{"id":"T69","span":{"begin":120,"end":124},"obj":"Body_part"},{"id":"T70","span":{"begin":135,"end":141},"obj":"Body_part"},{"id":"T71","span":{"begin":374,"end":380},"obj":"Body_part"},{"id":"T72","span":{"begin":413,"end":419},"obj":"Body_part"},{"id":"T73","span":{"begin":451,"end":455},"obj":"Body_part"},{"id":"T74","span":{"begin":459,"end":463},"obj":"Body_part"}],"attributes":[{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A69","pred":"fma_id","subj":"T69","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A70","pred":"fma_id","subj":"T70","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A71","pred":"fma_id","subj":"T71","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A72","pred":"fma_id","subj":"T72","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A73","pred":"fma_id","subj":"T73","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A74","pred":"fma_id","subj":"T74","obj":"http://purl.org/sig/ont/fma/fma74402"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T107","span":{"begin":186,"end":233},"obj":"Disease"},{"id":"T108","span":{"begin":186,"end":219},"obj":"Disease"},{"id":"T109","span":{"begin":235,"end":243},"obj":"Disease"},{"id":"T110","span":{"begin":235,"end":239},"obj":"Disease"},{"id":"T111","span":{"begin":333,"end":341},"obj":"Disease"},{"id":"T112","span":{"begin":333,"end":337},"obj":"Disease"}],"attributes":[{"id":"A107","pred":"mondo_id","subj":"T107","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A108","pred":"mondo_id","subj":"T108","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A110","pred":"mondo_id","subj":"T110","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A111","pred":"mondo_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A112","pred":"mondo_id","subj":"T112","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T101","span":{"begin":109,"end":113},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T102","span":{"begin":120,"end":124},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T103","span":{"begin":404,"end":407},"obj":"http://purl.obolibrary.org/obo/CLO_0008190"},{"id":"T104","span":{"begin":451,"end":455},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T105","span":{"begin":459,"end":463},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T16","span":{"begin":19,"end":40},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T17","span":{"begin":27,"end":40},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T18","span":{"begin":465,"end":472},"obj":"http://purl.obolibrary.org/obo/GO_0004526"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}

{"project":"LitCovid-sentences","denotations":[{"id":"T106","span":{"begin":0,"end":261},"obj":"Sentence"},{"id":"T107","span":{"begin":262,"end":428},"obj":"Sentence"},{"id":"T108","span":{"begin":429,"end":489},"obj":"Sentence"},{"id":"T109","span":{"begin":490,"end":567},"obj":"Sentence"},{"id":"T110","span":{"begin":568,"end":635},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases\nPositive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage\nRdRp (1) RdRp (2) E gene N gene Rnase P internal control\nCase 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83\nCase 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66\nCase 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83"}