PMC:7258756 / 13854-14568
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 201 | 333-343 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 208 | 87-91 | Gene | denotes | RdRp | Gene:43740578 |
| 209 | 97-101 | Gene | denotes | RdRp | Gene:43740578 |
| 210 | 118-119 | Gene | denotes | N | Gene:43740575 |
| 211 | 107-108 | Gene | denotes | E | Gene:43740570 |
| 212 | 186-233 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 213 | 235-245 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T68 | 109-113 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T69 | 120-124 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T70 | 135-141 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T71 | 374-380 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
| T72 | 413-419 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T73 | 451-455 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T74 | 459-463 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T107 | 186-233 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T108 | 186-219 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T109 | 235-243 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T110 | 235-239 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T111 | 333-341 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T112 | 333-337 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T101 | 109-113 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T102 | 120-124 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T103 | 404-407 | http://purl.obolibrary.org/obo/CLO_0008190 | denotes | Per |
| T104 | 451-455 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T105 | 459-463 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 19-40 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T17 | 27-40 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T18 | 465-472 | http://purl.obolibrary.org/obo/GO_0004526 | denotes | Rnase P |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T106 | 0-261 | Sentence | denotes | Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases |
| T107 | 262-428 | Sentence | denotes | Positive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage |
| T108 | 429-489 | Sentence | denotes | RdRp (1) RdRp (2) E gene N gene Rnase P internal control |
| T109 | 490-567 | Sentence | denotes | Case 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83 |
| T110 | 568-635 | Sentence | denotes | Case 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66 |