PMC:7253482 / 7503-8420 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"205","span":{"begin":53,"end":60},"obj":"Chemical"},{"id":"206","span":{"begin":33,"end":37},"obj":"Disease"},{"id":"207","span":{"begin":39,"end":43},"obj":"Disease"},{"id":"223","span":{"begin":112,"end":123},"obj":"Species"},{"id":"224","span":{"begin":532,"end":548},"obj":"Chemical"},{"id":"225","span":{"begin":577,"end":589},"obj":"Chemical"},{"id":"226","span":{"begin":595,"end":602},"obj":"Chemical"},{"id":"227","span":{"begin":614,"end":637},"obj":"Chemical"},{"id":"228","span":{"begin":664,"end":671},"obj":"Chemical"},{"id":"229","span":{"begin":748,"end":754},"obj":"Chemical"},{"id":"230","span":{"begin":788,"end":800},"obj":"Chemical"},{"id":"231","span":{"begin":806,"end":813},"obj":"Chemical"},{"id":"232","span":{"begin":847,"end":854},"obj":"Chemical"},{"id":"233","span":{"begin":885,"end":891},"obj":"Chemical"},{"id":"234","span":{"begin":92,"end":96},"obj":"Disease"},{"id":"235","span":{"begin":98,"end":102},"obj":"Disease"},{"id":"236","span":{"begin":554,"end":558},"obj":"Disease"},{"id":"237","span":{"begin":560,"end":564},"obj":"Disease"}],"attributes":[{"id":"A205","pred":"tao:has_database_id","subj":"205","obj":"MESH:D011134"},{"id":"A206","pred":"tao:has_database_id","subj":"206","obj":"MESH:D045169"},{"id":"A207","pred":"tao:has_database_id","subj":"207","obj":"MESH:D018352"},{"id":"A223","pred":"tao:has_database_id","subj":"223","obj":"Tax:11118"},{"id":"A226","pred":"tao:has_database_id","subj":"226","obj":"MESH:D011134"},{"id":"A228","pred":"tao:has_database_id","subj":"228","obj":"MESH:D011134"},{"id":"A229","pred":"tao:has_database_id","subj":"229","obj":"MESH:D011134"},{"id":"A231","pred":"tao:has_database_id","subj":"231","obj":"MESH:D011134"},{"id":"A232","pred":"tao:has_database_id","subj":"232","obj":"MESH:D008358"},{"id":"A233","pred":"tao:has_database_id","subj":"233","obj":"MESH:D000117"},{"id":"A234","pred":"tao:has_database_id","subj":"234","obj":"MESH:D045169"},{"id":"A235","pred":"tao:has_database_id","subj":"235","obj":"MESH:D018352"},{"id":"A236","pred":"tao:has_database_id","subj":"236","obj":"MESH:D045169"},{"id":"A237","pred":"tao:has_database_id","subj":"237","obj":"MESH:D018352"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T50","span":{"begin":126,"end":139},"obj":"Body_part"},{"id":"T51","span":{"begin":189,"end":199},"obj":"Body_part"},{"id":"T52","span":{"begin":269,"end":282},"obj":"Body_part"},{"id":"T53","span":{"begin":436,"end":441},"obj":"Body_part"},{"id":"T54","span":{"begin":847,"end":854},"obj":"Body_part"}],"attributes":[{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma60992"},{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma82801"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":436,"end":441},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002488"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":33,"end":37},"obj":"Disease"},{"id":"T29","span":{"begin":92,"end":96},"obj":"Disease"},{"id":"T30","span":{"begin":319,"end":322},"obj":"Disease"},{"id":"T32","span":{"begin":554,"end":558},"obj":"Disease"},{"id":"T33","span":{"begin":777,"end":780},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A31","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0000923"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T42","span":{"begin":62,"end":63},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T43","span":{"begin":372,"end":375},"obj":"http://purl.obolibrary.org/obo/CLO_0008975"},{"id":"T44","span":{"begin":387,"end":394},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T45","span":{"begin":479,"end":480},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T46","span":{"begin":523,"end":531},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T47","span":{"begin":610,"end":612},"obj":"http://purl.obolibrary.org/obo/CLO_0007490"},{"id":"T48","span":{"begin":775,"end":776},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T65","span":{"begin":53,"end":60},"obj":"Chemical"},{"id":"T66","span":{"begin":126,"end":139},"obj":"Chemical"},{"id":"T67","span":{"begin":189,"end":194},"obj":"Chemical"},{"id":"T68","span":{"begin":195,"end":199},"obj":"Chemical"},{"id":"T69","span":{"begin":269,"end":282},"obj":"Chemical"},{"id":"T70","span":{"begin":387,"end":394},"obj":"Chemical"},{"id":"T71","span":{"begin":396,"end":398},"obj":"Chemical"},{"id":"T72","span":{"begin":474,"end":476},"obj":"Chemical"},{"id":"T74","span":{"begin":541,"end":548},"obj":"Chemical"},{"id":"T75","span":{"begin":595,"end":602},"obj":"Chemical"},{"id":"T76","span":{"begin":610,"end":612},"obj":"Chemical"},{"id":"T77","span":{"begin":664,"end":671},"obj":"Chemical"},{"id":"T78","span":{"begin":673,"end":680},"obj":"Chemical"},{"id":"T79","span":{"begin":806,"end":813},"obj":"Chemical"},{"id":"T80","span":{"begin":847,"end":854},"obj":"Chemical"},{"id":"T81","span":{"begin":885,"end":891},"obj":"Chemical"}],"attributes":[{"id":"A65","pred":"chebi_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A66","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A67","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A68","pred":"chebi_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A69","pred":"chebi_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A70","pred":"chebi_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A71","pred":"chebi_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/CHEBI_74750"},{"id":"A72","pred":"chebi_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/CHEBI_55460"},{"id":"A73","pred":"chebi_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/CHEBI_74861"},{"id":"A74","pred":"chebi_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A75","pred":"chebi_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_140164"},{"id":"A77","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A78","pred":"chebi_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/CHEBI_87661"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A80","pred":"chebi_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A81","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_506227"},{"id":"A82","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_73685"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-Enju

    {"project":"LitCovid-sample-Enju","denotations":[{"id":"T1135","span":{"begin":0,"end":4},"obj":"NNP"},{"id":"T1136","span":{"begin":5,"end":6},"obj":"CD"},{"id":"T1137","span":{"begin":7,"end":20},"obj":"JJ"},{"id":"T1138","span":{"begin":21,"end":29},"obj":"NN"},{"id":"T1139","span":{"begin":30,"end":32},"obj":"IN"},{"id":"T1140","span":{"begin":33,"end":37},"obj":"NNP"},{"id":"T1141","span":{"begin":37,"end":38},"obj":"-COMMA-"},{"id":"T1142","span":{"begin":39,"end":43},"obj":"NNS"},{"id":"T1143","span":{"begin":44,"end":47},"obj":"CC"},{"id":"T1144","span":{"begin":48,"end":52},"obj":"NN"},{"id":"T1145","span":{"begin":53,"end":60},"obj":"NNS"},{"id":"T1146","span":{"begin":62,"end":63},"obj":"DT"},{"id":"T1147","span":{"begin":64,"end":73},"obj":"JJ"},{"id":"T1148","span":{"begin":74,"end":88},"obj":"NN"},{"id":"T1149","span":{"begin":89,"end":91},"obj":"IN"},{"id":"T1150","span":{"begin":92,"end":96},"obj":"NNP"},{"id":"T1151","span":{"begin":96,"end":97},"obj":"-COMMA-"},{"id":"T1152","span":{"begin":98,"end":102},"obj":"NNS"},{"id":"T1153","span":{"begin":103,"end":106},"obj":"CC"},{"id":"T1154","span":{"begin":107,"end":111},"obj":"NN"},{"id":"T1155","span":{"begin":112,"end":123},"obj":"NN"},{"id":"T1156","span":{"begin":124,"end":125},"obj":"NN"},{"id":"T1157","span":{"begin":126,"end":139},"obj":"NNS"},{"id":"T1158","span":{"begin":139,"end":140},"obj":"-COMMA-"},{"id":"T1159","span":{"begin":141,"end":148},"obj":"VBG"},{"id":"T1160","span":{"begin":149,"end":152},"obj":"DT"},{"id":"T1161","span":{"begin":153,"end":162},"obj":"NNS"},{"id":"T1162","span":{"begin":163,"end":165},"obj":"IN"},{"id":"T1163","span":{"begin":166,"end":174},"obj":"JJ"},{"id":"T1164","span":{"begin":175,"end":188},"obj":"NN"},{"id":"T1165","span":{"begin":189,"end":199},"obj":"JJ"},{"id":"T1166","span":{"begin":200,"end":207},"obj":"NNS"},{"id":"T1167","span":{"begin":208,"end":209},"obj":"-LRB-"},{"id":"T1168","span":{"begin":209,"end":214},"obj":"NN"},{"id":"T1169","span":{"begin":214,"end":215},"obj":"-COMMA-"},{"id":"T1170","span":{"begin":216,"end":221},"obj":"WRB"},{"id":"T1171","span":{"begin":222,"end":227},"obj":"NN"},{"id":"T1172","span":{"begin":227,"end":228},"obj":"-RRB-"},{"id":"T1173","span":{"begin":229,"end":234},"obj":"VBN"},{"id":"T1174","span":{"begin":235,"end":237},"obj":"IN"},{"id":"T1175","span":{"begin":238,"end":246},"obj":"NNS"},{"id":"T1177","span":{"begin":788,"end":805},"obj":"JJ"},{"id":"T1178","span":{"begin":806,"end":813},"obj":"NNS"},{"id":"T1179","span":{"begin":814,"end":817},"obj":"VBP"},{"id":"T1180","span":{"begin":818,"end":831},"obj":"RB"},{"id":"T1181","span":{"begin":832,"end":841},"obj":"VBN"},{"id":"T1182","span":{"begin":842,"end":846},"obj":"IN"},{"id":"T1183","span":{"begin":847,"end":854},"obj":"NN"},{"id":"T1184","span":{"begin":855,"end":863},"obj":"NNS"},{"id":"T1185","span":{"begin":864,"end":866},"obj":"IN"},{"id":"T1186","span":{"begin":867,"end":872},"obj":"JJ"},{"id":"T1187","span":{"begin":873,"end":880},"obj":"NNS"},{"id":"T1188","span":{"begin":881,"end":884},"obj":"CC"},{"id":"T1189","span":{"begin":885,"end":891},"obj":"NN"},{"id":"T1190","span":{"begin":892,"end":900},"obj":"NNS"},{"id":"T1191","span":{"begin":901,"end":903},"obj":"IN"},{"id":"T1192","span":{"begin":904,"end":908},"obj":"JJ"},{"id":"T1193","span":{"begin":909,"end":916},"obj":"NNS"}],"relations":[{"id":"R1144","pred":"arg1Of","subj":"T1138","obj":"T1135"},{"id":"R1145","pred":"arg1Of","subj":"T1135","obj":"T1136"},{"id":"R1146","pred":"arg1Of","subj":"T1138","obj":"T1137"},{"id":"R1147","pred":"arg1Of","subj":"T1138","obj":"T1139"},{"id":"R1148","pred":"arg2Of","subj":"T1140","obj":"T1139"},{"id":"R1149","pred":"arg1Of","subj":"T1140","obj":"T1141"},{"id":"R1150","pred":"arg2Of","subj":"T1143","obj":"T1141"},{"id":"R1151","pred":"arg1Of","subj":"T1142","obj":"T1143"},{"id":"R1152","pred":"arg2Of","subj":"T1145","obj":"T1143"},{"id":"R1153","pred":"arg1Of","subj":"T1145","obj":"T1144"},{"id":"R1154","pred":"arg1Of","subj":"T1148","obj":"T1146"},{"id":"R1155","pred":"arg1Of","subj":"T1148","obj":"T1147"},{"id":"R1156","pred":"arg1Of","subj":"T1148","obj":"T1149"},{"id":"R1157","pred":"arg2Of","subj":"T1153","obj":"T1149"},{"id":"R1158","pred":"arg1Of","subj":"T1150","obj":"T1151"},{"id":"R1159","pred":"arg2Of","subj":"T1152","obj":"T1151"},{"id":"R1160","pred":"arg1Of","subj":"T1151","obj":"T1153"},{"id":"R1161","pred":"arg2Of","subj":"T1157","obj":"T1153"},{"id":"R1162","pred":"arg1Of","subj":"T1157","obj":"T1154"},{"id":"R1163","pred":"arg1Of","subj":"T1157","obj":"T1155"},{"id":"R1164","pred":"arg1Of","subj":"T1157","obj":"T1156"},{"id":"R1165","pred":"arg1Of","subj":"T1148","obj":"T1158"},{"id":"R1166","pred":"arg1Of","subj":"T1148","obj":"T1159"},{"id":"R1167","pred":"arg2Of","subj":"T1161","obj":"T1159"},{"id":"R1168","pred":"arg1Of","subj":"T1161","obj":"T1160"},{"id":"R1169","pred":"arg1Of","subj":"T1161","obj":"T1162"},{"id":"R1170","pred":"arg2Of","subj":"T1166","obj":"T1162"},{"id"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1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-PD-FMA

    {"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T50","span":{"begin":126,"end":139},"obj":"Body_part"},{"id":"T51","span":{"begin":189,"end":199},"obj":"Body_part"},{"id":"T52","span":{"begin":269,"end":282},"obj":"Body_part"},{"id":"T53","span":{"begin":436,"end":441},"obj":"Body_part"},{"id":"T54","span":{"begin":847,"end":854},"obj":"Body_part"}],"attributes":[{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma60992"},{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma82801"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-CHEBI

    {"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T56","span":{"begin":53,"end":60},"obj":"Chemical"},{"id":"T57","span":{"begin":126,"end":139},"obj":"Chemical"},{"id":"T58","span":{"begin":189,"end":194},"obj":"Chemical"},{"id":"T59","span":{"begin":269,"end":282},"obj":"Chemical"},{"id":"T60","span":{"begin":387,"end":394},"obj":"Chemical"},{"id":"T61","span":{"begin":541,"end":548},"obj":"Chemical"},{"id":"T62","span":{"begin":595,"end":602},"obj":"Chemical"},{"id":"T63","span":{"begin":664,"end":671},"obj":"Chemical"},{"id":"T64","span":{"begin":673,"end":680},"obj":"Chemical"},{"id":"T65","span":{"begin":806,"end":813},"obj":"Chemical"},{"id":"T66","span":{"begin":847,"end":854},"obj":"Chemical"},{"id":"T67","span":{"begin":885,"end":891},"obj":"Chemical"}],"attributes":[{"id":"A59","pred":"chebi_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A66","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A60","pred":"chebi_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A61","pred":"chebi_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A67","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_506227"},{"id":"A68","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_73685"},{"id":"A65","pred":"chebi_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A63","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A62","pred":"chebi_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A64","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_87661"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-PD-NCBITaxon

    {"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T53","span":{"begin":33,"end":37},"obj":"Species"},{"id":"T54","span":{"begin":39,"end":43},"obj":"Species"},{"id":"T55","span":{"begin":92,"end":96},"obj":"Species"},{"id":"T56","span":{"begin":98,"end":102},"obj":"Species"},{"id":"T57","span":{"begin":107,"end":123},"obj":"Species"},{"id":"T58","span":{"begin":554,"end":558},"obj":"Species"},{"id":"T59","span":{"begin":560,"end":564},"obj":"Species"}],"attributes":[{"id":"A56","pred":"ncbi_taxonomy_id","subj":"T56","obj":"NCBItxid:1335626"},{"id":"A58","pred":"ncbi_taxonomy_id","subj":"T58","obj":"NCBItxid:694009"},{"id":"A53","pred":"ncbi_taxonomy_id","subj":"T53","obj":"NCBItxid:694009"},{"id":"A54","pred":"ncbi_taxonomy_id","subj":"T54","obj":"NCBItxid:1335626"},{"id":"A55","pred":"ncbi_taxonomy_id","subj":"T55","obj":"NCBItxid:694009"},{"id":"A59","pred":"ncbi_taxonomy_id","subj":"T59","obj":"NCBItxid:1335626"},{"id":"A57","pred":"ncbi_taxonomy_id","subj":"T57","obj":"NCBItxid:290028"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-sentences

    {"project":"LitCovid-sample-sentences","denotations":[{"id":"T42","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"T43","span":{"begin":62,"end":247},"obj":"Sentence"},{"id":"T44","span":{"begin":248,"end":576},"obj":"Sentence"},{"id":"T45","span":{"begin":577,"end":787},"obj":"Sentence"},{"id":"T46","span":{"begin":788,"end":917},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-PD-UBERON

    {"project":"LitCovid-sample-PD-UBERON","denotations":[{"id":"T2","span":{"begin":436,"end":441},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002488"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-PD-MONDO

    {"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T28","span":{"begin":33,"end":37},"obj":"Disease"},{"id":"T29","span":{"begin":92,"end":96},"obj":"Disease"},{"id":"T30","span":{"begin":554,"end":558},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-Pubtator

    {"project":"LitCovid-sample-Pubtator","denotations":[{"id":"206","span":{"begin":33,"end":37},"obj":"Disease"},{"id":"207","span":{"begin":39,"end":43},"obj":"Disease"},{"id":"205","span":{"begin":53,"end":60},"obj":"Chemical"},{"id":"234","span":{"begin":92,"end":96},"obj":"Disease"},{"id":"235","span":{"begin":98,"end":102},"obj":"Disease"},{"id":"223","span":{"begin":112,"end":123},"obj":"Species"},{"id":"224","span":{"begin":532,"end":548},"obj":"Chemical"},{"id":"236","span":{"begin":554,"end":558},"obj":"Disease"},{"id":"237","span":{"begin":560,"end":564},"obj":"Disease"},{"id":"225","span":{"begin":577,"end":589},"obj":"Chemical"},{"id":"226","span":{"begin":595,"end":602},"obj":"Chemical"},{"id":"227","span":{"begin":614,"end":637},"obj":"Chemical"},{"id":"228","span":{"begin":664,"end":671},"obj":"Chemical"},{"id":"229","span":{"begin":748,"end":754},"obj":"Chemical"},{"id":"230","span":{"begin":788,"end":800},"obj":"Chemical"},{"id":"231","span":{"begin":806,"end":813},"obj":"Chemical"},{"id":"232","span":{"begin":847,"end":854},"obj":"Chemical"},{"id":"233","span":{"begin":885,"end":891},"obj":"Chemical"}],"attributes":[{"id":"A234","pred":"pubann:denotes","subj":"234","obj":"MESH:D045169"},{"id":"A237","pred":"pubann:denotes","subj":"237","obj":"MESH:D018352"},{"id":"A236","pred":"pubann:denotes","subj":"236","obj":"MESH:D045169"},{"id":"A206","pred":"pubann:denotes","subj":"206","obj":"MESH:D045169"},{"id":"A207","pred":"pubann:denotes","subj":"207","obj":"MESH:D018352"},{"id":"A228","pred":"pubann:denotes","subj":"228","obj":"MESH:D011134"},{"id":"A226","pred":"pubann:denotes","subj":"226","obj":"MESH:D011134"},{"id":"A223","pred":"pubann:denotes","subj":"223","obj":"Tax:11118"},{"id":"A231","pred":"pubann:denotes","subj":"231","obj":"MESH:D011134"},{"id":"A235","pred":"pubann:denotes","subj":"235","obj":"MESH:D018352"},{"id":"A233","pred":"pubann:denotes","subj":"233","obj":"MESH:D000117"},{"id":"A232","pred":"pubann:denotes","subj":"232","obj":"MESH:D008358"},{"id":"A229","pred":"pubann:denotes","subj":"229","obj":"MESH:D011134"},{"id":"A205","pred":"pubann:denotes","subj":"205","obj":"MESH:D011134"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-UniProt

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https://www.uniprot.org/uniprot/P27732"},{"id":"A2578","pred":"uniprot_id","subj":"T2572","obj":"https://www.uniprot.org/uniprot/O09024"},{"id":"A2579","pred":"uniprot_id","subj":"T2572","obj":"https://www.uniprot.org/uniprot/O09023"},{"id":"A2580","pred":"uniprot_id","subj":"T2572","obj":"https://www.uniprot.org/uniprot/O09022"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-PD-GO-BP-0

    {"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T24","span":{"begin":175,"end":188},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T25","span":{"begin":708,"end":717},"obj":"http://purl.obolibrary.org/obo/GO_0007586"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-GO-BP

    {"project":"LitCovid-sample-GO-BP","denotations":[{"id":"T21","span":{"begin":175,"end":188},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T22","span":{"begin":708,"end":717},"obj":"http://purl.obolibrary.org/obo/GO_0007586"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T23","span":{"begin":166,"end":188},"obj":"http://purl.obolibrary.org/obo/GO_0006487"},{"id":"T24","span":{"begin":175,"end":188},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T25","span":{"begin":708,"end":717},"obj":"http://purl.obolibrary.org/obo/GO_0007586"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T42","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"T43","span":{"begin":62,"end":247},"obj":"Sentence"},{"id":"T44","span":{"begin":248,"end":576},"obj":"Sentence"},{"id":"T45","span":{"begin":577,"end":787},"obj":"Sentence"},{"id":"T46","span":{"begin":788,"end":917},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}

    LitCovid-sample-Glycan

    {"project":"LitCovid-sample-Glycan","denotations":[{"id":"T1","span":{"begin":847,"end":854},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname"},{"id":"T2","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G26693XF"},{"id":"T3","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G01864SU"},{"id":"T4","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G85391SA"},{"id":"T5","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G41950LU"},{"id":"T6","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G57195RJ"},{"id":"T7","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G17605FD"},{"id":"T8","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G54644LT"},{"id":"T9","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G89565QL"},{"id":"T10","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G55978NL"},{"id":"T11","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G25126RB"},{"id":"T12","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G25694UG"},{"id":"T13","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G80869MR"},{"id":"T14","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G51848AD"},{"id":"T15","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G94667GM"},{"id":"T16","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G30124BO"},{"id":"T17","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G82777EZ"},{"id":"T18","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G10151YZ"},{"id":"T19","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G17585ZM"},{"id":"T20","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G38254HJ"},{"id":"T21","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G04411CJ"},{"id":"T22","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G70374VG"},{"id":"T23","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G30874VW"},{"id":"T24","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G45176LJ"},{"id":"T25","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G75188FS"},{"id":"T26","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G69333MI"},{"id":"T27","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G10676XO"},{"id":"T28","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G14843DJ"},{"id":"T29","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G47546FR"},{"id":"T30","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G73695ZM"},{"id":"T31","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G40745NH"},{"id":"T32","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G31923TJ"},{"id":"T33","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G60519EP"},{"id":"T34","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G07933IA"},{"id":"T35","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G54496YV"},{"id":"T36","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G70070AY"},{"id":"T37","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G62953SQ"},{"id":"T38","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G25238AV"},{"id":"T39","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G40510DP"},{"id":"T40","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G61120TK"},{"id":"T41","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G81830JX"},{"id":"T42","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G01591HR"},{"id":"T43","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G90703NA"},{"id":"T44","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G56520XN"},{"id":"T45","span":{"begin":885,"end":891},"obj":"https://glytoucan.org/Structures/Glycans/G41342KV"}],"text":"Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.\na Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares."}