PMC:7253482 / 7503-8420
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
205 | 53-60 | Chemical | denotes | glycans | MESH:D011134 |
206 | 33-37 | Disease | denotes | SARS | MESH:D045169 |
207 | 39-43 | Disease | denotes | MERS | MESH:D018352 |
223 | 112-123 | Species | denotes | coronavirus | Tax:11118 |
224 | 532-548 | Chemical | denotes | N-linked glycans | |
225 | 577-589 | Chemical | denotes | Oligomannose | |
226 | 595-602 | Chemical | denotes | glycans | MESH:D011134 |
227 | 614-637 | Chemical | denotes | Man5GlcNAc2–Man9GlcNAc2 | |
228 | 664-671 | Chemical | denotes | glycans | MESH:D011134 |
229 | 748-754 | Chemical | denotes | glycan | MESH:D011134 |
230 | 788-800 | Chemical | denotes | Oligomannose | |
231 | 806-813 | Chemical | denotes | glycans | MESH:D011134 |
232 | 847-854 | Chemical | denotes | mannose | MESH:D008358 |
233 | 885-891 | Chemical | denotes | GlcNAc | MESH:D000117 |
234 | 92-96 | Disease | denotes | SARS | MESH:D045169 |
235 | 98-102 | Disease | denotes | MERS | MESH:D018352 |
236 | 554-558 | Disease | denotes | SARS | MESH:D045169 |
237 | 560-564 | Disease | denotes | MERS | MESH:D018352 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T50 | 126-139 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T51 | 189-199 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
T52 | 269-282 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T53 | 436-441 | Body_part | denotes | helix | http://purl.org/sig/ont/fma/fma60992 |
T54 | 847-854 | Body_part | denotes | mannose | http://purl.org/sig/ont/fma/fma82801 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T2 | 436-441 | Body_part | denotes | helix | http://purl.obolibrary.org/obo/UBERON_0002488 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T28 | 33-37 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 92-96 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 319-322 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T32 | 554-558 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T33 | 777-780 | Disease | denotes | pie | http://purl.obolibrary.org/obo/MONDO_0000923 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T42 | 62-63 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T43 | 372-375 | http://purl.obolibrary.org/obo/CLO_0008975 | denotes | SD1 |
T44 | 387-394 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T45 | 479-480 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T46 | 523-531 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
T47 | 610-612 | http://purl.obolibrary.org/obo/CLO_0007490 | denotes | M9 |
T48 | 775-776 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T65 | 53-60 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T66 | 126-139 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T67 | 189-194 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T68 | 195-199 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T69 | 269-282 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T70 | 387-394 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T71 | 396-398 | Chemical | denotes | FP | http://purl.obolibrary.org/obo/CHEBI_74750 |
T72 | 474-476 | Chemical | denotes | TM | http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861 |
T74 | 541-548 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T75 | 595-602 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T76 | 610-612 | Chemical | denotes | M9 | http://purl.obolibrary.org/obo/CHEBI_140164 |
T77 | 664-671 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T78 | 673-680 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
T79 | 806-813 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T80 | 847-854 | Chemical | denotes | mannose | http://purl.obolibrary.org/obo/CHEBI_37684 |
T81 | 885-891 | Chemical | denotes | GlcNAc | http://purl.obolibrary.org/obo/CHEBI_506227|http://purl.obolibrary.org/obo/CHEBI_73685 |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1135 | 0-4 | NNP | denotes | Fig. |
T1136 | 5-6 | CD | denotes | 1 |
T1137 | 7-20 | JJ | denotes | Compositional |
T1138 | 21-29 | NN | denotes | analysis |
T1139 | 30-32 | IN | denotes | of |
T1140 | 33-37 | NNP | denotes | SARS |
T1141 | 37-38 | -COMMA- | denotes | , |
T1142 | 39-43 | NNS | denotes | MERS |
T1143 | 44-47 | CC | denotes | and |
T1144 | 48-52 | NN | denotes | HKU1 |
T1145 | 53-60 | NNS | denotes | glycans |
T1146 | 62-63 | DT | denotes | a |
T1147 | 64-73 | JJ | denotes | Schematic |
T1148 | 74-88 | NN | denotes | representation |
T1149 | 89-91 | IN | denotes | of |
T1150 | 92-96 | NNP | denotes | SARS |
T1151 | 96-97 | -COMMA- | denotes | , |
T1152 | 98-102 | NNS | denotes | MERS |
T1153 | 103-106 | CC | denotes | and |
T1154 | 107-111 | NN | denotes | HKU1 |
T1155 | 112-123 | NN | denotes | coronavirus |
T1156 | 124-125 | NN | denotes | S |
T1157 | 126-139 | NNS | denotes | glycoproteins |
T1158 | 139-140 | -COMMA- | denotes | , |
T1159 | 141-148 | VBG | denotes | showing |
T1160 | 149-152 | DT | denotes | the |
T1161 | 153-162 | NNS | denotes | positions |
T1162 | 163-165 | IN | denotes | of |
T1163 | 166-174 | JJ | denotes | N-linked |
T1164 | 175-188 | NN | denotes | glycosylation |
T1165 | 189-199 | JJ | denotes | amino-acid |
T1166 | 200-207 | NNS | denotes | sequons |
T1167 | 208-209 | -LRB- | denotes | ( |
T1168 | 209-214 | NN | denotes | NXS/T |
T1169 | 214-215 | -COMMA- | denotes | , |
T1170 | 216-221 | WRB | denotes | where |
T1171 | 222-227 | NN | denotes | X ≠ P |
T1172 | 227-228 | -RRB- | denotes | ) |
T1173 | 229-234 | VBN | denotes | shown |
T1174 | 235-237 | IN | denotes | as |
T1175 | 238-246 | NNS | denotes | branches |
T1177 | 788-805 | JJ | denotes | Oligomannose-type |
T1178 | 806-813 | NNS | denotes | glycans |
T1179 | 814-817 | VBP | denotes | are |
T1180 | 818-831 | RB | denotes | schematically |
T1181 | 832-841 | VBN | denotes | annotated |
T1182 | 842-846 | IN | denotes | with |
T1183 | 847-854 | NN | denotes | mannose |
T1184 | 855-863 | NNS | denotes | residues |
T1185 | 864-866 | IN | denotes | as |
T1186 | 867-872 | JJ | denotes | green |
T1187 | 873-880 | NNS | denotes | circles |
T1188 | 881-884 | CC | denotes | and |
T1189 | 885-891 | NN | denotes | GlcNAc |
T1190 | 892-900 | NNS | denotes | residues |
T1191 | 901-903 | IN | denotes | as |
T1192 | 904-908 | JJ | denotes | blue |
T1193 | 909-916 | NNS | denotes | squares |
R1144 | T1138 | T1135 | arg1Of | analysis,Fig. |
R1145 | T1135 | T1136 | arg1Of | Fig.,1 |
R1146 | T1138 | T1137 | arg1Of | analysis,Compositional |
R1147 | T1138 | T1139 | arg1Of | analysis,of |
R1148 | T1140 | T1139 | arg2Of | SARS,of |
R1149 | T1140 | T1141 | arg1Of | SARS,"," |
R1150 | T1143 | T1141 | arg2Of | and,"," |
R1151 | T1142 | T1143 | arg1Of | MERS,and |
R1152 | T1145 | T1143 | arg2Of | glycans,and |
R1153 | T1145 | T1144 | arg1Of | glycans,HKU1 |
R1154 | T1148 | T1146 | arg1Of | representation,a |
R1155 | T1148 | T1147 | arg1Of | representation,Schematic |
R1156 | T1148 | T1149 | arg1Of | representation,of |
R1157 | T1153 | T1149 | arg2Of | and,of |
R1158 | T1150 | T1151 | arg1Of | SARS,"," |
R1159 | T1152 | T1151 | arg2Of | MERS,"," |
R1160 | T1151 | T1153 | arg1Of | ",",and |
R1161 | T1157 | T1153 | arg2Of | glycoproteins,and |
R1162 | T1157 | T1154 | arg1Of | glycoproteins,HKU1 |
R1163 | T1157 | T1155 | arg1Of | glycoproteins,coronavirus |
R1164 | T1157 | T1156 | arg1Of | glycoproteins,S |
R1165 | T1148 | T1158 | arg1Of | representation,"," |
R1166 | T1148 | T1159 | arg1Of | representation,showing |
R1167 | T1161 | T1159 | arg2Of | positions,showing |
R1168 | T1161 | T1160 | arg1Of | positions,the |
R1169 | T1161 | T1162 | arg1Of | positions,of |
R1170 | T1166 | T1162 | arg2Of | sequons,of |
R1171 | T1166 | T1163 | arg1Of | sequons,N-linked |
R1172 | T1166 | T1164 | arg1Of | sequons,glycosylation |
R1173 | T1166 | T1165 | arg1Of | sequons,amino-acid |
R1174 | T1166 | T1167 | arg1Of | sequons,( |
R1175 | T1168 | T1167 | arg2Of | NXS/T,( |
R1176 | T1172 | T1167 | arg3Of | ),( |
R1177 | T1168 | T1169 | arg1Of | NXS/T,"," |
R1178 | T1171 | T1170 | arg1Of | X ≠ P,where |
R1179 | T1168 | T1171 | arg1Of | NXS/T,X ≠ P |
R1180 | T1166 | T1173 | arg2Of | sequons,shown |
R1181 | T1173 | T1174 | arg1Of | shown,as |
R1182 | T1175 | T1174 | arg2Of | branches,as |
R1183 | T1178 | T1177 | arg1Of | glycans,Oligomannose-type |
R1184 | T1178 | T1179 | arg1Of | glycans,are |
R1185 | T1181 | T1179 | arg2Of | annotated,are |
R1186 | T1181 | T1180 | arg1Of | annotated,schematically |
R1187 | T1178 | T1181 | arg2Of | glycans,annotated |
R1188 | T1181 | T1182 | arg1Of | annotated,with |
R1189 | T1184 | T1182 | arg2Of | residues,with |
R1190 | T1184 | T1183 | arg1Of | residues,mannose |
R1191 | T1181 | T1185 | arg1Of | annotated,as |
R1192 | T1188 | T1185 | arg2Of | and,as |
R1193 | T1187 | T1186 | arg1Of | circles,green |
R1194 | T1187 | T1188 | arg1Of | circles,and |
R1195 | T1190 | T1188 | arg2Of | residues,and |
R1196 | T1190 | T1189 | arg1Of | residues,GlcNAc |
R1197 | T1181 | T1191 | arg1Of | annotated,as |
R1198 | T1193 | T1191 | arg2Of | squares,as |
R1199 | T1193 | T1192 | arg1Of | squares,blue |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T50 | 126-139 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T51 | 189-199 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
T52 | 269-282 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T53 | 436-441 | Body_part | denotes | helix | http://purl.org/sig/ont/fma/fma60992 |
T54 | 847-854 | Body_part | denotes | mannose | http://purl.org/sig/ont/fma/fma82801 |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T56 | 53-60 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T57 | 126-139 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T58 | 189-194 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T59 | 269-282 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T60 | 387-394 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T61 | 541-548 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T62 | 595-602 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T63 | 664-671 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T64 | 673-680 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
T65 | 806-813 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T66 | 847-854 | Chemical | denotes | mannose | http://purl.obolibrary.org/obo/CHEBI_37684 |
T67 | 885-891 | Chemical | denotes | GlcNAc | http://purl.obolibrary.org/obo/CHEBI_506227|http://purl.obolibrary.org/obo/CHEBI_73685 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T53 | 33-37 | Species | denotes | SARS | NCBItxid:694009 |
T54 | 39-43 | Species | denotes | MERS | NCBItxid:1335626 |
T55 | 92-96 | Species | denotes | SARS | NCBItxid:694009 |
T56 | 98-102 | Species | denotes | MERS | NCBItxid:1335626 |
T57 | 107-123 | Species | denotes | HKU1 coronavirus | NCBItxid:290028 |
T58 | 554-558 | Species | denotes | SARS | NCBItxid:694009 |
T59 | 560-564 | Species | denotes | MERS | NCBItxid:1335626 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T42 | 0-61 | Sentence | denotes | Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans. |
T43 | 62-247 | Sentence | denotes | a Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. |
T44 | 248-576 | Sentence | denotes | The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. |
T45 | 577-787 | Sentence | denotes | Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. |
T46 | 788-917 | Sentence | denotes | Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares. |
LitCovid-sample-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T2 | 436-441 | Body_part | denotes | helix | http://purl.obolibrary.org/obo/UBERON_0002488 |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T28 | 33-37 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 92-96 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 554-558 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
206 | 33-37 | Disease | denotes | SARS | MESH:D045169 |
207 | 39-43 | Disease | denotes | MERS | MESH:D018352 |
205 | 53-60 | Chemical | denotes | glycans | MESH:D011134 |
234 | 92-96 | Disease | denotes | SARS | MESH:D045169 |
235 | 98-102 | Disease | denotes | MERS | MESH:D018352 |
223 | 112-123 | Species | denotes | coronavirus | Tax:11118 |
224 | 532-548 | Chemical | denotes | N-linked glycans | |
236 | 554-558 | Disease | denotes | SARS | MESH:D045169 |
237 | 560-564 | Disease | denotes | MERS | MESH:D018352 |
225 | 577-589 | Chemical | denotes | Oligomannose | |
226 | 595-602 | Chemical | denotes | glycans | MESH:D011134 |
227 | 614-637 | Chemical | denotes | Man5GlcNAc2–Man9GlcNAc2 | |
228 | 664-671 | Chemical | denotes | glycans | MESH:D011134 |
229 | 748-754 | Chemical | denotes | glycan | MESH:D011134 |
230 | 788-800 | Chemical | denotes | Oligomannose | |
231 | 806-813 | Chemical | denotes | glycans | MESH:D011134 |
232 | 847-854 | Chemical | denotes | mannose | MESH:D008358 |
233 | 885-891 | Chemical | denotes | GlcNAc | MESH:D000117 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T2374 | 124-139 | Protein | denotes | S glycoproteins | https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94 |
T2473 | 267-282 | Protein | denotes | S glycoproteins | https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94 |
T2572 | 350-353 | Protein | denotes | RBD | https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022 |
LitCovid-sample-PD-GO-BP-0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24 | 175-188 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T25 | 708-717 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
LitCovid-sample-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21 | 175-188 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T22 | 708-717 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23 | 166-188 | http://purl.obolibrary.org/obo/GO_0006487 | denotes | N-linked glycosylation |
T24 | 175-188 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T25 | 708-717 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T42 | 0-61 | Sentence | denotes | Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans. |
T43 | 62-247 | Sentence | denotes | a Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches. |
T44 | 248-576 | Sentence | denotes | The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S. |
T45 | 577-787 | Sentence | denotes | Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart. |
T46 | 788-917 | Sentence | denotes | Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares. |
LitCovid-sample-Glycan
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 847-854 | http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname | denotes | mannose |
T2 | 885-891 | https://glytoucan.org/Structures/Glycans/G26693XF | denotes | GlcNAc |
T3 | 885-891 | https://glytoucan.org/Structures/Glycans/G01864SU | denotes | GlcNAc |
T4 | 885-891 | https://glytoucan.org/Structures/Glycans/G85391SA | denotes | GlcNAc |
T5 | 885-891 | https://glytoucan.org/Structures/Glycans/G41950LU | denotes | GlcNAc |
T6 | 885-891 | https://glytoucan.org/Structures/Glycans/G57195RJ | denotes | GlcNAc |
T7 | 885-891 | https://glytoucan.org/Structures/Glycans/G17605FD | denotes | GlcNAc |
T8 | 885-891 | https://glytoucan.org/Structures/Glycans/G54644LT | denotes | GlcNAc |
T9 | 885-891 | https://glytoucan.org/Structures/Glycans/G89565QL | denotes | GlcNAc |
T10 | 885-891 | https://glytoucan.org/Structures/Glycans/G55978NL | denotes | GlcNAc |
T11 | 885-891 | https://glytoucan.org/Structures/Glycans/G25126RB | denotes | GlcNAc |
T12 | 885-891 | https://glytoucan.org/Structures/Glycans/G25694UG | denotes | GlcNAc |
T13 | 885-891 | https://glytoucan.org/Structures/Glycans/G80869MR | denotes | GlcNAc |
T14 | 885-891 | https://glytoucan.org/Structures/Glycans/G51848AD | denotes | GlcNAc |
T15 | 885-891 | https://glytoucan.org/Structures/Glycans/G94667GM | denotes | GlcNAc |
T16 | 885-891 | https://glytoucan.org/Structures/Glycans/G30124BO | denotes | GlcNAc |
T17 | 885-891 | https://glytoucan.org/Structures/Glycans/G82777EZ | denotes | GlcNAc |
T18 | 885-891 | https://glytoucan.org/Structures/Glycans/G10151YZ | denotes | GlcNAc |
T19 | 885-891 | https://glytoucan.org/Structures/Glycans/G17585ZM | denotes | GlcNAc |
T20 | 885-891 | https://glytoucan.org/Structures/Glycans/G38254HJ | denotes | GlcNAc |
T21 | 885-891 | https://glytoucan.org/Structures/Glycans/G04411CJ | denotes | GlcNAc |
T22 | 885-891 | https://glytoucan.org/Structures/Glycans/G70374VG | denotes | GlcNAc |
T23 | 885-891 | https://glytoucan.org/Structures/Glycans/G30874VW | denotes | GlcNAc |
T24 | 885-891 | https://glytoucan.org/Structures/Glycans/G45176LJ | denotes | GlcNAc |
T25 | 885-891 | https://glytoucan.org/Structures/Glycans/G75188FS | denotes | GlcNAc |
T26 | 885-891 | https://glytoucan.org/Structures/Glycans/G69333MI | denotes | GlcNAc |
T27 | 885-891 | https://glytoucan.org/Structures/Glycans/G10676XO | denotes | GlcNAc |
T28 | 885-891 | https://glytoucan.org/Structures/Glycans/G14843DJ | denotes | GlcNAc |
T29 | 885-891 | https://glytoucan.org/Structures/Glycans/G47546FR | denotes | GlcNAc |
T30 | 885-891 | https://glytoucan.org/Structures/Glycans/G73695ZM | denotes | GlcNAc |
T31 | 885-891 | https://glytoucan.org/Structures/Glycans/G40745NH | denotes | GlcNAc |
T32 | 885-891 | https://glytoucan.org/Structures/Glycans/G31923TJ | denotes | GlcNAc |
T33 | 885-891 | https://glytoucan.org/Structures/Glycans/G60519EP | denotes | GlcNAc |
T34 | 885-891 | https://glytoucan.org/Structures/Glycans/G07933IA | denotes | GlcNAc |
T35 | 885-891 | https://glytoucan.org/Structures/Glycans/G54496YV | denotes | GlcNAc |
T36 | 885-891 | https://glytoucan.org/Structures/Glycans/G70070AY | denotes | GlcNAc |
T37 | 885-891 | https://glytoucan.org/Structures/Glycans/G62953SQ | denotes | GlcNAc |
T38 | 885-891 | https://glytoucan.org/Structures/Glycans/G25238AV | denotes | GlcNAc |
T39 | 885-891 | https://glytoucan.org/Structures/Glycans/G40510DP | denotes | GlcNAc |
T40 | 885-891 | https://glytoucan.org/Structures/Glycans/G61120TK | denotes | GlcNAc |
T41 | 885-891 | https://glytoucan.org/Structures/Glycans/G81830JX | denotes | GlcNAc |
T42 | 885-891 | https://glytoucan.org/Structures/Glycans/G01591HR | denotes | GlcNAc |
T43 | 885-891 | https://glytoucan.org/Structures/Glycans/G90703NA | denotes | GlcNAc |
T44 | 885-891 | https://glytoucan.org/Structures/Glycans/G56520XN | denotes | GlcNAc |
T45 | 885-891 | https://glytoucan.org/Structures/Glycans/G41342KV | denotes | GlcNAc |